PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR02G26130.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | E2F/DP | ||||||||
Protein Properties | Length: 439aa MW: 48526.1 Da PI: 8.8026 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 74.5 | 1.1e-23 | 53 | 118 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rk+ksL+ll+++f++l+++ + + + l+++ak+L v +rRRiYDi+NVLe+++++ +k+kn+++w+g LPERR02G26130.1 53 RKQKSLGLLCSNFVALYNRDDVESIGLDDAAKRL---GV--ERRRIYDIVNVLESVGILMRKAKNRYSWIG 118 79*****************999************...**..****************************98 PP | |||||||
2 | E2F_TDP | 75.8 | 4.4e-24 | 197 | 277 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 rkeksL+lltq+f+kl+ + e ++++l+e+ak L+ e ++++k+RR+YDi+NVL++ln i+k ++k+++rw g LPERR02G26130.1 197 RKEKSLGLLTQNFVKLFLTMEVDTISLDEAAKLLLGEghaenSMRTKVRRLYDIANVLSSLNFIDKiqqadSRKPAFRWLG 277 79********************************************************************99*******87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 6.9E-26 | 49 | 119 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.48E-16 | 52 | 117 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 8.4E-29 | 53 | 118 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 4.1E-21 | 54 | 118 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 7.8E-22 | 194 | 278 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 2.2E-30 | 197 | 277 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 3.0E-19 | 198 | 277 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 5.03E-12 | 199 | 277 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0032876 | Biological Process | negative regulation of DNA endoreduplication | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 439 aa Download sequence Send to blast |
MAAAAAVMDA APAPLSSMTD VAEAEAVPAL PQRQQPVFVE GRGGKLRDHA YSRKQKSLGL 60 LCSNFVALYN RDDVESIGLD DAAKRLGVER RRIYDIVNVL ESVGILMRKA KNRYSWIGFG 120 GVPMALRELK ERALREKSGL APLPVEEPSS ALMSDDEDED KMGDVDGDTE SEKLSQPFDN 180 PSEKPGAPRC RLRSDHRKEK SLGLLTQNFV KLFLTMEVDT ISLDEAAKLL LGEGHAENSM 240 RTKVRRLYDI ANVLSSLNFI DKIQQADSRK PAFRWLGSAG KPKAENGVTI AIPPPGKTMS 300 NKRVFGTELT NININQSKLD SAIPKKPKLA QSGGDILKNC KLSVQRQLGQ GAQGDFVYGP 360 FHPAGARKQE LNNGNKGQQD SVRDWESLAA SFRPQYQNQA LCDLFAHYVE AWKSWYSEFA 420 QGSSMMQQHF GMPVTNQFL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4yo2_A | 2e-37 | 52 | 269 | 3 | 228 | Transcription factor E2F8 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00397 | DAP | Transfer from AT3G48160 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR02G26130.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111537 | 0.0 | AK111537.1 Oryza sativa Japonica Group cDNA clone:J013041C09, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015626334.1 | 0.0 | E2F transcription factor-like E2FE | ||||
TrEMBL | A0A0D9VKU0 | 0.0 | A0A0D9VKU0_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR02G26130.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3185 | 38 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48160.2 | 1e-102 | DP-E2F-like 1 |