PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G25630.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family CO-like
Protein Properties Length: 446aa    MW: 49106.4 Da    PI: 5.1247
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G25630.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.52.7e-081859338
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                     +r C+ + + +++++C  ++ +lC+ C ++ H+       H+
  LPERR02G25630.1 18 ARACDSCLRRRARWYCAADDAFLCQGCDTSVHSAnplarrHE 59
                     578*****************************6567777776 PP
2CCT69.77.7e-24395438144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  LPERR02G25630.1 395 REARVTRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRP 438
                      9*****************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.6E-111663IPR000315B-box-type zinc finger
PROSITE profilePS5011910.7221663IPR000315B-box-type zinc finger
PfamPF006433.3E-71960IPR000315B-box-type zinc finger
CDDcd000213.11E-92163No hitNo description
PROSITE profilePS5101716.122395437IPR010402CCT domain
PfamPF062033.0E-18395437IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MSCSSADKAA GAVGGKAARA CDSCLRRRAR WYCAADDAFL CQGCDTSVHS ANPLARRHER  60
LRLRASSPPR LTSSSVEESK RTGVTPAWSK RKARTRRPQV KSVGQLLSRR LVVPEMAEES  120
SPSDERNKAE EDGAHDEEEG QLLYRVPVFD PALTEFRSPP PIDDATAAAS SSCLFKEDAD  180
GGAGEDTKYP APSSPVQQLP DSFINFEPTD AELREFAADM EALLGQGLDD SNELQDSFYM  240
ETLGLMSTPV DEEGGGRVKM ELDGVDSTSR VSLPPSCRPQ PNKPEEGESA DVLDIDFNCN  300
SPTVADDDEQ KSSASNVAAT DANFFQKSLD LRLNYEEIIE SWGSSPWTDG QRPHGQIDDL  360
WPNDHNYGLW SAAEGGHGAE AGMMATRPRM DGPGREARVT RYREKRRTRL FSKKIRYEVR  420
KLNAEKRPRM KGRFVKRPSA APCAVT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1405421RRTRLFSKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G25630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622659.10.0zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A0D9VKM40.0A0A0D9VKM4_9ORYZ; Uncharacterized protein
STRINGLPERR02G25630.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32833058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-42B-box type zinc finger protein with CCT domain