PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G25570.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MIKC_MADS
Protein Properties Length: 234aa    MW: 26561.1 Da    PI: 9.1618
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G25570.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.48.9e-291059251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     ri+n++ rqvtfskRrng+lKKAeELS+LCdaev ++ifsstg+lye+s+
  LPERR02G25570.1 10 RIDNSTSRQVTFSKRRNGLLKKAEELSILCDAEVGLVIFSSTGRLYEFSN 59
                     8***********************************************95 PP
2K-box53.51e-1880168997
            K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                      +++++ + +q+e+a L+++++nLq+++++l+ e+L+ L + +Lq Le++Le sl++iR +K  l++++  el +  + +++++ +L +k
  LPERR02G25570.1  80 NATSEIKIWQREAASLRQQLHNLQESHKQLMCEELSGLGVSDLQGLENRLEISLRSIRMRKGSLIHQENIELSRSLNLMSQQKLELYNK 168
                      67888999**********************************************************99999888888888877777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.805161IPR002100Transcription factor, MADS-box
SMARTSM004323.5E-39160IPR002100Transcription factor, MADS-box
CDDcd002654.23E-43278No hitNo description
SuperFamilySSF554551.57E-31276IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004048.8E-29323IPR002100Transcription factor, MADS-box
PfamPF003197.4E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004048.8E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004048.8E-293859IPR002100Transcription factor, MADS-box
PfamPF014861.1E-1783168IPR002487Transcription factor, K-box
PROSITE profilePS5129711.79285175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAEELSILCD AEVGLVIFSS TGRLYEFSNT  60
NMKAVIDRYT NAKEELLDGN ATSEIKIWQR EAASLRQQLH NLQESHKQLM CEELSGLGVS  120
DLQGLENRLE ISLRSIRMRK GSLIHQENIE LSRSLNLMSQ QKLELYNKAC EQRGSTDLNE  180
SSSIPYSFRI MHNANTHPNL ELSQSKQKGE CSKTNVPELG FHPYGGGMVR DYGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-21174174MEF2C
5f28_B5e-21174174MEF2C
5f28_C5e-21174174MEF2C
5f28_D5e-21174174MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional factor that targets the CArG motif 5'-C(A/T)TTAAAAAG-3' in the promoter of D14. Directly suppresses D14 expression to control the outgrowth of axillary buds. {ECO:0000269|PubMed:23463009}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G25570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8353720.0CT835372.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI222G19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626795.11e-136MADS-box transcription factor 57 isoform X2
SwissprotQ6Z6W21e-137MAD57_ORYSJ; MADS-box transcription factor 57
TrEMBLA0A0D9VKL61e-171A0A0D9VKL6_9ORYZ; Uncharacterized protein
STRINGONIVA02G34790.11e-138(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.13e-82AGAMOUS-like 16
Publications ? help Back to Top
  1. Guo S, et al.
    The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14.
    Nat Commun, 2013. 4: p. 1566
    [PMID:23463009]
  2. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  3. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]
  4. Wang H, et al.
    A Signaling Cascade from miR444 to RDR1 in Rice Antiviral RNA Silencing Pathway.
    Plant Physiol., 2016. 170(4): p. 2365-77
    [PMID:26858364]