PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G25270.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 529aa    MW: 58495.9 Da    PI: 9.6879
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G25270.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.10.00037122139219
                      HHHHHHHHHHHHHHHHHH CS
              HLH   2 rrahnerErrRRdriNsa 19 
                      r +h++ E+rRR +iN++
  LPERR02G25270.2 122 RSKHSATEQRRRTKINDR 139
                      889*************96 PP
2HLH23.88.3e-081521832055
                      HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  20 feeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +e LrellP+     ++K +Ka+ L +++eYI+ Lq
  LPERR02G25270.2 152 LEILRELLPHT----DQKRDKASFLSEVIEYIRFLQ 183
                      799*******8....8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-12118191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.8E-18119193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.518120182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.10E-12122187No hitNo description
SMARTSM003534.8E-5126188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-5151183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MQLFQGEEPA HDFLSLRAGG PSSPPFQHRD TQHSSQGYGV EMHRSLKPME LAKQRSRSNG  60
NGTAARSASP AGSDSEEHVL PGGVGTFSIR QASCTPSREE AATRADGRSS ASSADQGPST  120
PRSKHSATEQ RRRTKINDRQ ASREQEPTMK MLEILRELLP HTDQKRDKAS FLSEVIEYIR  180
FLQEKVQKYE TADPERNHED SKSMPWAKVY YRSCWRNTQN ISQVQGGDLS PSTQDMNNEQ  240
YGSKQTSVAH PAPFNTQSIT SAATSSSHMA AGTPQNWEKN STSSNQPPWL SMSTTHHESE  300
SGNRMLKKHE RQTHDDENHS ISSAYSQGSV PEPFVTSRIK LVQYVANRIQ FQICNRLFNR  360
LTEALKKSGL DPSQTNISVE INMSKRAREN TGDNSKCGRR RRLDGWVCSG AARLRLRLPP  420
ERVGIWGIWE SGDFCGFRWD VAEWETKRLV GGGRGAGGRA AIREGHGAGA GQSDGQAGKV  480
STPCWFGGLK RSGVVIEYLG LVRRAFLPVS LRGLLGSYPL LEDTGLGEA
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G25270.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0682280.0AK068228.1 Oryza sativa Japonica Group cDNA clone:J013148L19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015689641.10.0PREDICTED: transcription factor BIM1-like isoform X3
TrEMBLA0A0D9VKH60.0A0A0D9VKH6_9ORYZ; Uncharacterized protein
STRINGLPERR02G25270.30.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.33e-25bHLH family protein