PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G25180.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NF-YB
Protein Properties Length: 275aa    MW: 29105.2 Da    PI: 6.7994
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G25180.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB171.41e-5338133297
            NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                      reqdr++Pianv+rim++vlP +akis+daket+qecvse+isf+t+ea+++cqre+rkti+++d+lwa++ lGf+dyvepl+vyl++yre+eg
  LPERR02G25180.1  38 REQDRLMPIANVIRIMRRVLPVHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSRLGFDDYVEPLSVYLHRYREFEG 131
                      89*******************************************************************************************9 PP

            NF-YB  96 ek 97 
                      e+
  LPERR02G25180.1 132 ES 133
                      86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.7E-4936139IPR009072Histone-fold
SuperFamilySSF471131.86E-3840143IPR009072Histone-fold
PfamPF008086.7E-2544107IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006158.9E-177189No hitNo description
PROSITE patternPS0068507490IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006158.9E-1790108No hitNo description
PRINTSPR006158.9E-17109127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0033613Molecular Functionactivating transcription factor binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MESGYPAGGA TNGAGAAAAD GNGGAQAAAG AAAPATIREQ DRLMPIANVI RIMRRVLPVH  60
AKISDDAKET IQECVSEYIS FITGEANERC QREQRKTITA EDVLWAMSRL GFDDYVEPLS  120
VYLHRYREFE GESRGVVGAP RGDHHHGHVG MMTSPMHKSS RAQPGSMVTH HDMQMHAAMY  180
GGGAVPPLPQ QQHPHPHHHH GFLMAPAHHG GYAPYEMYGG DQHGMAAYYG AGMYAPGGGG  240
GGNNGADGSG SSGSGGTGTP QTVVNFEHQH PFGYK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A1e-6136128597NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G25180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2880361e-162AB288036.1 Oryza sativa Japonica Group OsHAP3E mRNA for HAP3 subunit of HAP complex, complete cds.
GenBankAK1078611e-162AK107861.1 Oryza sativa Japonica Group cDNA clone:002-134-B07, full insert sequence.
GenBankAP0041791e-162AP004179.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1124_G07.
GenBankAP0149581e-162AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624920.11e-98nuclear transcription factor Y subunit B-10
TrEMBLA0A0D9VKG50.0A0A0D9VKG5_9ORYZ; Uncharacterized protein
STRINGLPERR02G25180.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.22e-63nuclear factor Y, subunit B6