PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G25080.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family CO-like
Protein Properties Length: 405aa    MW: 44179 Da    PI: 4.7832
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G25080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.97.3e-07445540
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                      C+ ++e++   +C+++   lC +C  + H+       Ht++
  LPERR02G25080.1  4 LCDFCGEQRSMVYCRSDAASLCLSCDRNVHSAnalsrrHTRT 45
                     7*****************************657888889876 PP
2zf-B_box26.11.8e-084789541
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41
                      C++++++++   C + ++ lC++C  ++H g       H++++
  LPERR02G25080.1 47 LCDRCGSQPAAVRCLEENTSLCQNCDWNGH-GaastaagHKRQT 89
                     7*****************************.5588888998876 PP
3CCT64.53.2e-22348391144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      R++al+RYkeK+k+RkF+KkirY+sRKa+A+ R+RvKGrFvk+ 
  LPERR02G25080.1 348 RDNALTRYKEKKKRRKFDKKIRYASRKARADVRKRVKGRFVKAG 391
                      899**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.1E-10147IPR000315B-box-type zinc finger
PROSITE profilePS501199.983147IPR000315B-box-type zinc finger
CDDcd000211.53E-7447No hitNo description
PROSITE profilePS501199.574390IPR000315B-box-type zinc finger
PfamPF006432.4E-54789IPR000315B-box-type zinc finger
CDDcd000217.35E-74790No hitNo description
SMARTSM003360.0434890IPR000315B-box-type zinc finger
PfamPF062037.0E-17348390IPR010402CCT domain
PROSITE profilePS5101715.408348390IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MDALCDFCGE QRSMVYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR CGSQPAAVRC  60
LEENTSLCQN CDWNGHGAAS TAAGHKRQTI NCYSGCPSSA ELSRIWSFTM DIPPVAAEPN  120
CEEGINMMSI NDSGVSNHCV APEDSSLLDI DSTSLMSDLP TEGKFKPLIG SSSGDAMNLL  180
PLNADQPAEH VSTTTKAPCV TDKDMFNDGS VYEDFCVDDA DLTFENYEEL FGTSHIQTEQ  240
LFDDAGIDSY FEMKEVPANE SNEQPKPMQT EYSNAVDSGM SNPVARADSS HCIPARQAIS  300
SISLSFSGVT GESSAGDFQD CGVSSMILMG EPPWHPPGPE GSSAGGSRDN ALTRYKEKKK  360
RRKFDKKIRY ASRKARADVR KRVKGRFVKA GEAYDYDPLS QTRSY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1357361KKKRR
2357362KKKRRK
3358362KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G25080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0018880.0AB001888.1 Oryza sativa Japonica Group mRNA for zinc finger protein, complete cds, clone:S3574.
GenBankAK0716300.0AK071630.1 Oryza sativa Japonica Group cDNA clone:J023105D03, full insert sequence.
GenBankCT8322790.0CT832279.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA228H16, full insert sequence.
GenBankCT8322800.0CT832280.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA228J16, full insert sequence.
GenBankCT8322820.0CT832282.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI209I20, full insert sequence.
GenBankEU6058490.0EU605849.1 Oryza sativa Indica Group isolate Ba8 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627427.10.0zinc finger protein CONSTANS-LIKE 9 isoform X1
RefseqXP_015627428.10.0zinc finger protein CONSTANS-LIKE 9 isoform X1
RefseqXP_025878658.10.0zinc finger protein CONSTANS-LIKE 9 isoform X3
RefseqXP_025878659.10.0zinc finger protein CONSTANS-LIKE 9 isoform X1
SwissprotQ9SSE51e-126COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A0D9VKF30.0A0A0D9VKF3_9ORYZ; Uncharacterized protein
STRINGLPERR02G25080.20.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20793788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.12e-92B-box type zinc finger protein with CCT domain