PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G23480.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family G2-like
Protein Properties Length: 373aa    MW: 39753.3 Da    PI: 7.6723
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G23480.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.94.1e-32195248255
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  LPERR02G23480.1 195 PRMRWTTSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 248
                      9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.79E-15192249IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-28193248IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-23195249IPR006447Myb domain, plants
PfamPF002492.0E-7196247IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MELFPAHPDL QLQISPPPST KSMDLGFWKR ALESSTTTTT AAAATAAAAT TTSPSIIPTS  60
SSPPATSGGV GAGGFYLQAA VAPANGHHHH HQHHHQLGVG GAFQFLHRTQ PIPPQDAAGG  120
GGGVPDLAFA RPIRGIPVYN TSRPLPFLNG HHHHQHCYGG ADAIGGAAAA GPRSPNKQAA  180
ALRLAAAPAR SMRAPRMRWT TSLHARFVHA VELLGGHERA TPKSVLELMD VKDLTLAHVK  240
SHLQMYRTIK TTDHKQPAPS YGQAKTIIEI PDDNMFDINN TSGSESSVQQ QSNLDGNEQA  300
SNMCALWSNN SSSRGAWFHD KSRDATPGDI KSFEDVQSQS PENDASDLNS PPFQIPETVS  360
AMKPNLDFTL GRM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-16196250458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-16196250458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-16196250357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-16196250357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-16196250357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-16196250357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-16196250458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-16196250458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-16196250458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-16196250458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-16196250458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-16196250458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G23480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623606.11e-161probable transcription factor KAN2 isoform X1
TrEMBLA0A0D9VJT00.0A0A0D9VJT0_9ORYZ; Uncharacterized protein
STRINGLPERR02G23480.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94383445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17695.11e-37G2-like family protein