PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G22990.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 473aa    MW: 50092.4 Da    PI: 7.1634
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G22990.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.9e-1662106147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT eE+ ++++a +++G   W++I +++g ++t+ q++s+ qk+
  LPERR02G22990.1  62 REKWTDEEHRRFLEALQLHGRA-WRRIQEHIG-TKTAVQIRSHAQKF 106
                      789*****************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.05E-1556109IPR009057Homeodomain-like
PROSITE profilePS5129420.84757111IPR017930Myb domain
TIGRFAMsTIGR015578.5E-1660109IPR006447Myb domain, plants
SMARTSM007177.4E-1361109IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-962102IPR009057Homeodomain-like
PfamPF002497.2E-1462105IPR001005SANT/Myb domain
CDDcd001677.10E-1064107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MEVACLQGNA MATDENGADD HAGGESTVVD NLRSHMNYGD MDLSGEEHVP KARKPYTITK  60
QREKWTDEEH RRFLEALQLH GRAWRRIQEH IGTKTAVQIR SHAQKFFSKV VTAFRSHVVR  120
ESSGGSNTGS GAGAASAAIT IPPPRPKRKP AHPYPRKVDG GVDKKHVPAL KPPLRKQSLS  180
DQQEDGSPTS VLTAAAQIGA EVLGGGLSNN SSGSGSPAPS VAGSDEHVDG GGSPASSVDR  240
EDVCLSPTAE LAMQAPNTKL SIASTDAKEA SSESSVFRLF GKSVVVKDSD QHLSASAEKS  300
NRNILLPSFA AAQGSTSNPW QTSMQQQFLY FLPRSGDGFA AQPVMPWFGY NGSLPCALFY  360
PQTTTNQQCH RDSECAEFRA SQREGSLTGS NTASSVVLGS AAAQNSDAAD RDAAAAASPR  420
LTKCESSASV SLQRRGFVPY KRRGAESELL RSEAAGGGGE EAVADGELTR LCL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G22990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1117261e-144AK111726.1 Oryza sativa Japonica Group cDNA clone:J023036F23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623484.10.0protein REVEILLE 1 isoform X2
TrEMBLA0A0D9VJL30.0A0A0D9VJL3_9ORYZ; Uncharacterized protein
STRINGLPERR02G22990.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27223686
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.11e-34MYB_related family protein