PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G22520.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family HD-ZIP
Protein Properties Length: 802aa    MW: 86082.3 Da    PI: 5.6138
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G22520.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.63.3e-2197152156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +++ +++t++q++eLe+lF+++++p++++r+eL+++l+L+ rqVk+WFqNrR+++k
  LPERR02G22520.1  97 KKRYHRHTPQQIQELEALFKECPHPDEKQRAELSRRLSLDARQVKFWFQNRRTQMK 152
                      678899***********************************************999 PP
2START188.63.2e-593125441206
                      HHHHHHHHHHHHHHHHC-TT-EEEE......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHH.HHHHHHCCCGGCT-TT-S....E CS
            START   1 elaeeaaqelvkkalaeepgWvkss......esengdevlqkfeeskv.....dsgealrasgvvdmvla.llveellddkeqWdetla....k 78 
                      ela +a++elvk+a+ e+p+Wv         e +n +e+l +f +  +     + +ea+r+sg+v+ +    lve+l+d + +W+ ++     k
  LPERR02G22520.1 312 ELAISAMDELVKMAQMEDPLWVPALpgapskEVLNFEEYLHSFIPCIGmkpagYVSEASRESGLVIIDNSlALVETLMDER-RWSDMFScmiaK 404
                      57889*****************99988888888888888888877777*****************9876658999999999.************ PP

                      EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE..-TTS--....-TTSEE-EESSEEEEEEEECTC CS
            START  79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvd..seqkppe...sssvvRaellpSgiliepksng 160
                      a++le +s+g      gal lm+aelq+lsplvp R+++f+R+++ql +g w++vdvS+d  ++++++    +++ v++++lpSg+++++++ng
  LPERR02G22520.1 405 ATVLEEVSTGiagsrnGALLLMKAELQVLSPLVPiREVTFLRFCKQLAEGAWAVVDVSIDglVRDHNSAtapTAGNVKCRRLPSGCVMQDTPNG 498
                      ***********************************************************96545666657789********************* PP

                      EEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 161 hskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                      ++kvtwveh+++++ ++h+l+r+l++sgla+ga++w+atlqrqce+
  LPERR02G22520.1 499 YCKVTWVEHTEYDEVSVHQLYRPLLRSGLAFGARRWLATLQRQCEC 544
                      ********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-2281148IPR009057Homeodomain-like
SuperFamilySSF466896.68E-2187154IPR009057Homeodomain-like
PROSITE profilePS5007118.12394154IPR001356Homeobox domain
SMARTSM003891.5E-1995158IPR001356Homeobox domain
CDDcd000865.33E-1996154No hitNo description
PfamPF000469.5E-1997152IPR001356Homeobox domain
PROSITE patternPS000270129152IPR017970Homeobox, conserved site
PROSITE profilePS5084845.186303547IPR002913START domain
SuperFamilySSF559616.11E-32306544No hitNo description
CDDcd088755.13E-116307543No hitNo description
SMARTSM002341.7E-47312544IPR002913START domain
PfamPF018521.7E-51313544IPR002913START domain
SuperFamilySSF559616.11E-21565768No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009827Biological Processplant-type cell wall modification
GO:0042335Biological Processcuticle development
GO:0043481Biological Processanthocyanin accumulation in tissues in response to UV light
GO:0048497Biological Processmaintenance of floral organ identity
GO:0048765Biological Processroot hair cell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 802 aa     Download sequence    Send to blast
MSFGGLFDGG GGGGMQFPFT SGFSSSPALS LALDNAGGGI GGRMLAGGAG SSAGGAVTRD  60
TEAENDSRSG SDHLDAISAA GEDDVEDAEP SNSRKRKKRY HRHTPQQIQE LEALFKECPH  120
PDEKQRAELS RRLSLDARQV KFWFQNRRTQ MKTQLERHEN ALLKQENDKL RAENMTIREA  180
MRSPMCGSCG SPAMLGEVSL EEQHLRIENA RLKDELNRVC ALATKFLGKP VNLMSPPPFP  240
QPHLSFPMPN SSLELAIGGI GGLGSLGTLP GCMGEFAGGV SSPMGTVITP ARATGPALPS  300
LVGNIDRSVF LELAISAMDE LVKMAQMEDP LWVPALPGAP SKEVLNFEEY LHSFIPCIGM  360
KPAGYVSEAS RESGLVIIDN SLALVETLMD ERRWSDMFSC MIAKATVLEE VSTGIAGSRN  420
GALLLMKAEL QVLSPLVPIR EVTFLRFCKQ LAEGAWAVVD VSIDGLVRDH NSATAPTAGN  480
VKCRRLPSGC VMQDTPNGYC KVTWVEHTEY DEVSVHQLYR PLLRSGLAFG ARRWLATLQR  540
QCECLAILMS STTVAANDST AISQEGKRSM LKLARRMTEN FCAGVSASSA REWSKLDGAT  600
GSIGEDVRVM ARKSVSEPGE PPGVVLSAAT SVWVPVAPEK LFNFLRDEQL RAEWDILSNG  660
GPMQEMTQIA KGQRDGNSVS LLRASAVSAN QSSMLILQET CTDASGSIVV YAPVDIPAMQ  720
LVMNGGDSTY VALLPSGFAI LPNGPRIGTS GYETGGSLLT VAFQILVNNQ PTAKLTVESV  780
ETVNNLISCT IKKIKTALQC DA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19397RKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00421DAPTransfer from AT4G00730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G22520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1016480.0AB101648.1 Oryza sativa Japonica Group Roc5 mRNA for GL2-type homeodomain protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006647677.10.0PREDICTED: homeobox-leucine zipper protein ROC5
SwissprotQ6EPF00.0ROC5_ORYSJ; Homeobox-leucine zipper protein ROC5
TrEMBLA0A0D9VJF60.0A0A0D9VJF6_9ORYZ; Uncharacterized protein
STRINGLPERR02G22520.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120337116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Zou LP, et al.
    Leaf rolling controlled by the homeodomain leucine zipper class IV gene Roc5 in rice.
    Plant Physiol., 2011. 156(3): p. 1589-602
    [PMID:21596949]
  2. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]