PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR02G22470.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

Dof

Protein Properties

Length: 387aa MW: 39263.5 Da PI: 8.7393

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR02G22470.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125	2.4e-39	79	140	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 kekal+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss LPERR02G22470.1 79 KEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 140 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-30	76	137	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.6E-33	81	137	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.059	83	137	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	85	121	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MDAAHWHQGL GLVKPMEEML MGANPNPNGS TNPPPPPPSS AATAQRPIAP PAAGSAAAGA 60 VGAGAGAGAG TERRTRPQKE KALNCPRCNS TNTKFCYYNN YSLQQPRYFC KTCRRYWTEG 120 GSLRNVPVGG GSRKNKRSSS SVVVSSAAAA TSVSGTVSVG LANKNPKLMH EGGAQADLNL 180 AFPHHHHGGG GGRGLQPPEF AAFPSLESSS VCNNLAANGG RGGGGVGAFS AMELLRSTGC 240 YVPLPQMQLG GMPPEYAAAG FALGEFRMPP PPQHQQQAQT VLGFSLDTGA GGNPVYGAPC 300 SAGMQDGAAG RLLFPFEDLK PVVSAAAGDN ANSGGDHHHH QFDHSKNNHN SGGGGVMGGG 360 HETAGFWNSS MIGNGSSNGG GGGGGSW

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MDAAHWHQGL GLVKPMEEML MGANPNPNGS TNPPPPPPSS AATAQRPIAP PAAGSAAAGA  60
VGAGAGAGAG TERRTRPQKE KALNCPRCNS TNTKFCYYNN YSLQQPRYFC KTCRRYWTEG  120
GSLRNVPVGG GSRKNKRSSS SVVVSSAAAA TSVSGTVSVG LANKNPKLMH EGGAQADLNL  180
AFPHHHHGGG GGRGLQPPEF AAFPSLESSS VCNNLAANGG RGGGGVGAFS AMELLRSTGC  240
YVPLPQMQLG GMPPEYAAAG FALGEFRMPP PPQHQQQAQT VLGFSLDTGA GGNPVYGAPC  300
SAGMQDGAAG RLLFPFEDLK PVVSAAAGDN ANSGGDHHHH QFDHSKNNHN SGGGGVMGGG  360
HETAGFWNSS MIGNGSSNGG GGGGGSW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	218	224	GGRGGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR02G22470.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015627550.1	1e-141	dof zinc finger protein 2 isoform X1
Swissprot	B9F1L8	1e-142	DOF2_ORYSJ; Dof zinc finger protein 2
TrEMBL	A0A0D9VJE8	0.0	A0A0D9VJE8_9ORYZ; Uncharacterized protein
STRING	LPERR02G22470.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2369	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	3e-39	Dof family protein

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159]