PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G22400.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NF-YC
Protein Properties Length: 345aa    MW: 38626.5 Da    PI: 6.5078
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G22400.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC72.37.2e-234977100
            NF-YC   7 ekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprde 100
                      ++qi+  td  + +lP +r+++i++   +   isa+ P++++k celfi eltlr+w+ a++++r+ l   di +a++ t+ + fl d+v r++
  LPERR02G22400.1   4 QEQIDLGTDNWKLTLPTSRVRNIIRGRANGMLISANLPAFVTKLCELFIQELTLRAWVFAQSQNRNILLDIDIVKAIADTESYHFLADVVRRHQ 97 
                      4568889999999*****************************************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008083.2E-71780IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471133.84E-141893IPR009072Histone-fold
Gene3DG3DSA:1.10.20.103.7E-181894IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MWSQEQIDLG TDNWKLTLPT SRVRNIIRGR ANGMLISANL PAFVTKLCEL FIQELTLRAW  60
VFAQSQNRNI LLDIDIVKAI ADTESYHFLA DVVRRHQVAK LTMPNTTIAK RHRPNKMNLS  120
YHHTQTINMS PLVDCLPFVA ISPMALMGAH RTESPTINKK HINANTFIGD NSNASWVSPH  180
LLGGKGDLVS ITSACDIKKM NNLRSINSLN AVIDASSRDV ATVTRQGRTT QPISFKDTCA  240
SHEDNYVVSS LVGHGDITST GDDVDVNWLW NEEQNYGMHF LGEDNFSKES LGGTMEDDAL  300
LSSAKDFSLI CYTHEEYNNE KDIRDDICSN SSNNTKKEPN KKQTE
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G22400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9VJD90.0A0A0D9VJD9_9ORYZ; Uncharacterized protein
STRINGLPERR02G22400.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139681528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.21e-16nuclear factor Y, subunit C2