PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G22320.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 597aa    MW: 61623.5 Da    PI: 8.5097
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G22320.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-0592114123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ C+k F r  nL+ H r H
  LPERR02G22320.1  92 FVCEVCNKGFQREQNLQLHRRGH 114
                      89*******************88 PP
2zf-C2H211.60.00088169191123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC +C+k++  +s+ k H + +
  LPERR02G22320.1 169 WKCDKCSKRYAVQSDWKAHSKIC 191
                      58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.3E-691114IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.78E-791114No hitNo description
SMARTSM003550.004192114IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.09492114IPR007087Zinc finger, C2H2
PfamPF121713.9E-592114IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.1E-4157190IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.78E-7164189No hitNo description
SMARTSM00355140169189IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
MASNSSAAAV AALFGIRDSD HEDQIKPLFA QHHHQQQPVA PSNAGTAISA EGSVAGQAAA  60
AAPPVKKKRT LPDPDAEVIA LSPKTLMATN RFVCEVCNKG FQREQNLQLH RRGHNLPWKL  120
KQKNPLQAQR RRVYLCPEPT CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK CDKCSKRYAV  180
QSDWKAHSKI CGTREYRCDC GTLFSRRDSF ITHRAFCDAL AQESARLPPP AAAGHIYGST  240
AAANMALSLS QVGSHLASTL HDPHHHHPDG LLRFGGSAAA GRLDHLLSSS GASAFRSLPP  300
PPQSSSAAPF LFGAGDGDGF FQGKPFHGLM QLPDLQGNGA GGGGGPAAAG PGLYNLGYIA  360
SSGNSSGNSS HGQQMTNNTD QFSEGGGGGG GGGSETSAAA AIFRDFSGGG GGDHHNQMAH  420
SAGMYGNDHG GMTMLPQMSA TALLQKAAQM GSSTSASNAA GVSVFGGGGF GTSGSSSITH  480
GGRGSAMVDH GQMHLQSLMN SLAGGGGGAG NNADHHGMFG SGGMIDPRMY DMDQHEVKFS  540
QVGGGAGAGD VTRDFLGVGG GGFMRGMSMA RGGEHGGHGG DMGSLEAEMK FNGGRMQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-34165227365Zinc finger protein JACKDAW
5b3h_F3e-34165227365Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G22320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1206030.0AK120603.1 Oryza sativa Japonica Group cDNA clone:J013149P10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006647668.10.0PREDICTED: protein indeterminate-domain 4, chloroplastic-like
RefseqXP_015688820.10.0PREDICTED: protein indeterminate-domain 4, chloroplastic-like
TrEMBLA0A0D9VJC50.0A0A0D9VJC5_9ORYZ; Uncharacterized protein
STRINGLPERR02G22320.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17333798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-103indeterminate(ID)-domain 12