PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR02G20610.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | TCP | ||||||||
Protein Properties | Length: 109aa MW: 11224.8 Da PI: 11.4504 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 30 | 1.7e-09 | 50 | 74 | 8 | 32 |
TCP 8 hskihTkvggRdRRvRlsaecaarf 32 +++h+kv+gR+RRvR+++ caar LPERR02G20610.1 50 AKDRHSKVNGRGRRVRMPIVCAARA 74 6899999****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.4E-7 | 49 | 73 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 109 aa Download sequence Send to blast |
MSSRDAAAAT FHVYQPLQIQ AATVAPAAAE AGGAAQLVVP APSKKAAAGA KDRHSKVNGR 60 GRRVRMPIVC AARAAAAATY VPMAQAHHHH LNLLAALSGA ARRAEEESR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR02G20610.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK061568 | 3e-37 | AK061568.1 Oryza sativa Japonica Group cDNA clone:006-311-F05, full insert sequence. | |||
GenBank | AP004067 | 3e-37 | AP004067.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1581_H09. | |||
GenBank | AP014958 | 3e-37 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012610 | 3e-37 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004953208.1 | 2e-18 | transcription factor TCP21-like | ||||
TrEMBL | A0A0D9VIQ0 | 6e-69 | A0A0D9VIQ0_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR02G20610.1 | 1e-69 | (Leersia perrieri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 3e-07 | TCP family protein |