PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR02G20290.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | ARF | ||||||||
Protein Properties | Length: 680aa MW: 73607.3 Da PI: 6.8493 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.7 | 2.2e-23 | 123 | 224 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f k+lt+sd+++ g +++p+ +ae++ ++ + t++ +d +g W++++iyr++++r++lt+GW+ Fv++++L +gD++vF + LPERR02G20290.1 123 FAKTLTQSDANNGGGFSVPRYCAETIfprldyaADPPVQ--TVVAKDVHGVAWNFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RG 212 89*****************************96555555..8************************************************..34 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 +++ l+v+++r+ LPERR02G20290.1 213 DGGDLHVGIRRA 224 88999*****97 PP | |||||||
2 | Auxin_resp | 113.8 | 1.6e-37 | 274 | 357 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ as +++Fe vY+Prast+eF+v+++ v++al+v++++GmRfkmafetedss++++ +Gtv+gv+ +dp+rWp+S+Wr+L+ LPERR02G20290.1 274 AARLASVGQPFEAVYYPRASTPEFIVRAAAVRAALRVQWCPGMRFKMAFETEDSSRISWfMGTVAGVQVADPIRWPQSPWRLLQ 357 6788999***************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.2E-37 | 114 | 226 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.49E-29 | 118 | 226 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.44E-22 | 122 | 223 | No hit | No description |
Pfam | PF02362 | 1.7E-21 | 123 | 224 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.7E-20 | 123 | 225 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.689 | 123 | 225 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 6.8E-32 | 274 | 357 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 16.042 | 594 | 674 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 680 aa Download sequence Send to blast |
MITFADLAEP AAPGAERCVD RQLWLACAGG MCTVPPVGAS VYYFPQGHAE HALGLATPEL 60 SAARVPALVP CRVAAVRYMA DPDTDEVFAR IRLVPLRAGE DGDVEDGDGV ATAEDQHEKP 120 ASFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYAADPPV QTVVAKDVHG VAWNFRHIYR 180 GTPRRHLLTT GWSTFVNQKK LVAGDSIVFL RGDGGDLHVG IRRAKRGFCG GGGEAEEAAS 240 HLPGWDQYGG LMRGNASPCA KGRGKVRAED VVEAARLASV GQPFEAVYYP RASTPEFIVR 300 AAAVRAALRV QWCPGMRFKM AFETEDSSRI SWFMGTVAGV QVADPIRWPQ SPWRLLQVTW 360 DEPDLLQNVK RVSPWLVELV PSMPAVHLSS FSPPRKKPRI PAYPEFPFEG QLLNPAFPPN 420 PLAHGHHPHH YPHPSFFPFP DVSAPAGIQG ARQAQFGPSL SDLHLTHLQS SLMYPGLRRP 480 DHVSPTTIPP RISTDLTMGG HGSPPARGDT VSCALSIGAK KPDDTKPLGL MLFGQRILTE 540 QQISLSGSSE KCANASEGSG SGVIQTSPTD NTSSERLQWF RENSAVSELG LLEPGRCKVF 600 IESDTVGRNL DLSALSSFEQ LYGRLSEMCG IDSAELRSRV LYRGATGEVK HAGDEPFSEF 660 IKLARRLTIL TDAGSDNLGS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-77 | 19 | 378 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR02G20290.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK243230 | 0.0 | AK243230.1 Oryza sativa Japonica Group cDNA, clone: J100044L04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015622752.1 | 0.0 | auxin response factor 8 | ||||
Swissprot | Q6K223 | 0.0 | ARFH_ORYSJ; Auxin response factor 8 | ||||
TrEMBL | A0A0D9VIK6 | 0.0 | A0A0D9VIK6_9ORYZ; Auxin response factor | ||||
STRING | LPERR02G20290.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP516 | 37 | 152 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |