PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR02G20100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | NAC | ||||||||
Protein Properties | Length: 250aa MW: 27279.4 Da PI: 8.3203 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 165.7 | 1.6e-51 | 10 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrF P+deel+++yL+kkv+++++ +++ evd++ ePw+Lp+ +k + +ewyfFs +d+kyatg+r+nratk+gyWkatgkd+ev LPERR02G20100.1 10 LPPGFRFFPSDEELICHYLQKKVANEQIAKGSTLVEVDLHAREPWELPEVAKLTASEWYFFSFKDRKYATGSRTNRATKTGYWKATGKDREVRG 103 79*************************999889***************87778889************************************98 PP NAM 95 k..kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++++vg++ktLvfy+grap+g+kt Wvmhe+rl LPERR02G20100.1 104 SssSRAVVGMRKTLVFYQGRAPHGVKTGWVMHEFRL 139 8667778***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.29E-59 | 7 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.432 | 10 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-27 | 11 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MALKEIESTL PPGFRFFPSD EELICHYLQK KVANEQIAKG STLVEVDLHA REPWELPEVA 60 KLTASEWYFF SFKDRKYATG SRTNRATKTG YWKATGKDRE VRGSSSSRAV VGMRKTLVFY 120 QGRAPHGVKT GWVMHEFRLD SPHSPPREDW VLCRVFQKKK GDGDGCAQDS GGASSPTFTG 180 STSSSTHLQA PDHHHPAATA GGYCNIDLHA PGYSGTAGFT PTAIPAQPAA SQYQYGGAAL 240 GFPEDYGFGA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-48 | 5 | 159 | 10 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR02G20100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006648848.1 | 1e-126 | PREDICTED: NAC domain-containing protein 21/22-like | ||||
TrEMBL | A0A0D9VII2 | 0.0 | A0A0D9VII2_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR02G20100.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP697 | 38 | 166 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 9e-76 | NAC domain containing protein 74 |