PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G19270.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family CO-like
Protein Properties Length: 282aa    MW: 29550.7 Da    PI: 4.5172
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G19270.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.78.4e-072652430
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedCl 30
                     r C+ ++ + ++l+C+ ++ +lC  C 
  LPERR02G19270.1 26 RPCDACGAEAARLYCRADGAFLCGGCD 52
                     67************************7 PP
2CCT72.31.2e-24210253144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea+l+RY+eKrk+R+F+K+irY+sRKa+Ae+RpRvKGrF+k+a
  LPERR02G19270.1 210 REARLMRYREKRKNRRFDKTIRYASRKAYAETRPRVKGRFAKRA 253
                      9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501198.9582351IPR000315B-box-type zinc finger
CDDcd000211.45E-72655No hitNo description
PfamPF062031.7E-18210252IPR010402CCT domain
PROSITE profilePS5101716.976210252IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MEAEDKPMVG AGAGYSSSSW GLGTTRPCDA CGAEAARLYC RADGAFLCGG CDRVPVAPFF  60
GALTDATPPP HGAGADAAQV EEHAEDDDDE DGLSNEAEAA SWLLPEPDDN NCHDDSGGAA  120
AAAFFADTGA YLGVDLDFAR SMDGIKAIGV PVAPPELDLA AGGLFYPDHS HSINHSLSSS  180
SEVAVVPDAV SAGAAPSMMV VVTASKGKER EARLMRYREK RKNRRFDKTI RYASRKAYAE  240
TRPRVKGRFA KRADDDTLLP ETPCSPAFSS ALTASDGVVP SF
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G19270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015688663.11e-109PREDICTED: zinc finger protein CONSTANS-LIKE 4-like
TrEMBLA0A0D9VI610.0A0A0D9VI61_9ORYZ; Uncharacterized protein
STRINGLPERR02G19270.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21913272
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15840.17e-27B-box type zinc finger protein with CCT domain