PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR02G18630.2

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

Protein Properties

Length: 591aa MW: 64768.3 Da PI: 4.9967

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR02G18630.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	32.4	1.6e-10	496	544	32	83
--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 +s ++l+d+ r W v + k+ + +t+GWk Fv an+L++gD++ + LPERR02G18630.2 496 RS-VIILKDPMKRLWPVIY--YEKPIFVGFTAGWKPFVAANNLQVGDVCKLV 544 33.799***********..**************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	8.727	463	560	IPR003340	B3 DNA binding domain
SMART	SM01019	0.003	465	560	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	6.5E-11	471	544	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	7.26E-12	472	544	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.02E-11	474	551	No hit	No description
Pfam	PF02362	5.7E-8	495	544	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 591 aa Download sequence Send to blast
MKKRKERHTL SDDLVSSYSG QDSEGIYDDS HVSGESSRRK EPKITVDVEI VPSNVAAKSI 60 NTASETKDPE RVESGVGNES LMALGNKDKN LGDGECKTRS DSVLCIQEET RRSEVIIITD 120 EASSTQENED TMKQRTSNEA SETHHMPINT QKEAERVGDD VWHESSVALN NKMGNMILGK 180 CKNNDVSPIC STGRTNGSEI IPTTDSIPLA QEDNDREKLS TFSCLKEGKS TTREPELAAT 240 TPTKCTEIHD LDEDSRQKHQ RNSVQVKSTI DIDNYPNNGE MNSSGNDSRL YEAPGGSRCL 300 QKWKEDIVSG QAAHDEIGQV RPEKPQNAGE KFVDNCGPMG QTPVDPRLES DVTDTCLKSV 360 LTIPIEQLPS PDSVSVSKYG DGSADGNHFF NRKGATAQLQ ATKEPLKPTC SGGSRQGDKI 420 LVSASRAHQS ELQIPQQENA KFSCCVTPVA LVPANDELQD LDDHSLQLCI SSTIQKWIEL 480 PKSVPKAPLN KGLHDRSVII LKDPMKRLWP VIYYEKPIFV GFTAGWKPFV AANNLQVGDV 540 CKLVKELDED EPAYQASRKI VVFCCSNNNN VLGCCGWPPG CLAAVLGGLH F

Sequence ? help Back to Top

Protein Sequence Length: 591 aa Download sequence Send to blast

MKKRKERHTL SDDLVSSYSG QDSEGIYDDS HVSGESSRRK EPKITVDVEI VPSNVAAKSI  60
NTASETKDPE RVESGVGNES LMALGNKDKN LGDGECKTRS DSVLCIQEET RRSEVIIITD  120
EASSTQENED TMKQRTSNEA SETHHMPINT QKEAERVGDD VWHESSVALN NKMGNMILGK  180
CKNNDVSPIC STGRTNGSEI IPTTDSIPLA QEDNDREKLS TFSCLKEGKS TTREPELAAT  240
TPTKCTEIHD LDEDSRQKHQ RNSVQVKSTI DIDNYPNNGE MNSSGNDSRL YEAPGGSRCL  300
QKWKEDIVSG QAAHDEIGQV RPEKPQNAGE KFVDNCGPMG QTPVDPRLES DVTDTCLKSV  360
LTIPIEQLPS PDSVSVSKYG DGSADGNHFF NRKGATAQLQ ATKEPLKPTC SGGSRQGDKI  420
LVSASRAHQS ELQIPQQENA KFSCCVTPVA LVPANDELQD LDDHSLQLCI SSTIQKWIEL  480
PKSVPKAPLN KGLHDRSVII LKDPMKRLWP VIYYEKPIFV GFTAGWKPFV AANNLQVGDV  540
CKLVKELDED EPAYQASRKI VVFCCSNNNN VLGCCGWPPG CLAAVLGGLH F

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR02G18630.2

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015624189.1	0.0	B3 domain-containing protein Os02g0598200
Refseq	XP_015624190.1	0.0	B3 domain-containing protein Os02g0598200
Swissprot	Q6K5K2	0.0	Y2982_ORYSJ; B3 domain-containing protein Os02g0598200
TrEMBL	A0A0D9VHV4	0.0	A0A0D9VHV4_9ORYZ; Uncharacterized protein
STRING	LPERR02G18630.1	0.0	(Leersia perrieri)

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]