PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR02G18380.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | NAC | ||||||||
Protein Properties | Length: 422aa MW: 46930.8 Da PI: 5.1205 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 85.5 | 1e-26 | 57 | 229 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevd....iykvePwdLpk............................kvkaeekew 58 lp+G++F+P+d el+ e+L++k+ + ++e+i+++d i++++P++Lp +k++ ++ LPERR02G18380.1 57 LPAGVKFDPSDLELL-EHLEQKIGLGGskphMFIDEFIPTIDndegILYSHPENLPGmdfmssdgillfskllvypcrllnswatGMKKDGTSG 149 799************.99****876654565333334555544445**********5589******************9999877666677788 PP NAM 59 yfFskrdkkyatgkrknra.........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +fF++ +++y g+rk+r+ +++ +W++tgk+k++++ kg ++g kk++v+y ++r k+ k++Wvmh+y+l LPERR02G18380.1 150 HFFHRVSNAYGCGQRKRRKisncdhivsVEHVRWHKTGKSKAIVD-KGVTKGWKKIMVLYksSQRGVKPDKANWVMHQYHL 229 ******************87899998888899*************.999***********4435777888*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-10 | 42 | 125 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 25.646 | 57 | 248 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-12 | 58 | 229 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 9.15E-21 | 131 | 248 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 422 aa Download sequence Send to blast |
MARSWLITGR GVAKKIRNAP HSSSRPISEL GAEAQMECPN CKHVIDNSDV AIQWPGLPAG 60 VKFDPSDLEL LEHLEQKIGL GGSKPHMFID EFIPTIDNDE GILYSHPENL PGMDFMSSDG 120 ILLFSKLLVY PCRLLNSWAT GMKKDGTSGH FFHRVSNAYG CGQRKRRKIS NCDHIVSVEH 180 VRWHKTGKSK AIVDKGVTKG WKKIMVLYKS SQRGVKPDKA NWVMHQYHLG AQEDEKDGEL 240 VVSRITYQLH GKQIDKSETE NADEESDAFA ARVGPKTPKT NTPQPCRLNN SPCETENYAV 300 VLEEQDEEEV NIPIVSLKDD AENPAWCAGE SQAAQEALEA QPSLDESLRC HEVLDSSYHE 360 TLLPSDRPIL SQGGNELLDM NLNGLYGLAD LYNVDLGTPP DFQLADLQFG SQESIGKWLD 420 SI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR02G18380.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK121953 | 0.0 | AK121953.1 Oryza sativa Japonica Group cDNA clone:J033107L05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624086.1 | 0.0 | NAC domain-containing protein 73 | ||||
TrEMBL | A0A0D9VHS5 | 0.0 | A0A0D9VHS5_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR02G18380.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2110 | 37 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01600.1 | 3e-83 | NAC domain containing protein 44 |