PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G17680.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 378aa    MW: 40669 Da    PI: 8.0511
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G17680.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.46.7e-54381631128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtdeel+++yL kk+++ ++ + +++ e+d++k+ePwdLp++++ +ekewyfF+ +d+ky+tg r+nrat+sgyWkatgkd+e+++
  LPERR02G17680.3  38 LPPGFRFHPTDEELITHYLVKKTADPRFAA-RAVGEADLNKCEPWDLPSRATMGEKEWYFFCVKDRKYPTGLRTNRATESGYWKATGKDREIFR 130
                      79*************************999.88***************988899**************************************** PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +++lvg+kktLvfy+grap+g kt Wvmheyr+
  LPERR02G17680.3 131 -GKSLVGMKKTLVFYTGRAPRGGKTGWVMHEYRI 163
                      .999****************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-6429190IPR003441NAC domain
PROSITE profilePS5100558.77438190IPR003441NAC domain
PfamPF023651.1E-2839163IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MRLARHHQVV AATTTMEHDV HHNHNQRQAM QQQQDMDLPP GFRFHPTDEE LITHYLVKKT  60
ADPRFAARAV GEADLNKCEP WDLPSRATMG EKEWYFFCVK DRKYPTGLRT NRATESGYWK  120
ATGKDREIFR GKSLVGMKKT LVFYTGRAPR GGKTGWVMHE YRIHGKHAAS AAAAFPKTKE  180
EWVLCRVFKK SLELPAAAAA AGRRGAGAGA GTAVADVGAA ASVSMPIMAD VVGLAPCALP  240
PLMDVSAGGG GGCVSPAPMP HVTCFSNQLE GQSLNPPYLN DPASTVAVDP LAGMSSASPF  300
LDTIYAGHDA VTGGMVHELL MCGGGGWSYC NKGGERDASQ DTGVTSEVNG NPGEISSASR  360
QRQQQQHVLD PHASLWAY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-54271934171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G17680.3
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0281801e-163AB028180.1 Oryza sativa mRNA for OsNAC1 protein, complete cds.
GenBankCT8347641e-163CT834764.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA110A07, full insert sequence.
GenBankCT8347651e-163CT834765.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA021O03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623389.11e-156NAC domain-containing protein 92 isoform X1
SwissprotQ9FLJ23e-89NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A0D9VHI80.0A0A0D9VHI8_9ORYZ; Uncharacterized protein
STRINGLPERR02G17680.30.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.13e-84NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]