PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G16700.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 104aa    MW: 11196.8 Da    PI: 11.2917
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G16700.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.6e-192171155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++y+GVr++k +g+Wv+eIr p   g + r++lg+f++ae+Aa a++ a+++l+g
  LPERR02G16700.1 21 PQYRGVRRRK-WGKWVSEIRQP---GTKVRIWLGSFDSAEMAAVAHDVAALRLRG 71
                     68*****998.**********8...325*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.77E-302180No hitNo description
PfamPF008471.2E-122171IPR001471AP2/ERF domain
PROSITE profilePS5103223.6832280IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.2E-302280IPR001471AP2/ERF domain
SMARTSM003802.0E-332286IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-212281IPR016177DNA-binding domain
PRINTSPR003673.9E-102334IPR001471AP2/ERF domain
PRINTSPR003673.9E-104561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MEQKHQASPA AMAGGSGGGG PQYRGVRRRK WGKWVSEIRQ PGTKVRIWLG SFDSAEMAAV  60
AHDVAALRLR GRDGAQLNFP GSVGWLPQPA TTDPFDGSIK KLLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-162084367ATERF1
3gcc_A4e-162084367ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G16700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0058084e-98AP005808.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0038F20.
GenBankAP0149584e-98AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126104e-98CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624476.17e-51ethylene-responsive transcription factor ERF027, partial
SwissprotQ9C9I23e-28ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A0D9VH575e-69A0A0D9VH57_9ORYZ; Uncharacterized protein
STRINGLPERR02G16700.18e-70(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22443389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.17e-22ERF family protein