PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR02G16450.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | NAC | ||||||||
Protein Properties | Length: 204aa MW: 22711.3 Da PI: 6.4102 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 107.7 | 1.4e-33 | 7 | 124 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGf+F P+deelvv++L++kv+ +++ ++i+++ +++Pw+L+ k+ + ++wyfF++ + +r+ ++gyW+ g d++v+s LPERR02G16450.1 7 LPPGFHFFPSDEELVVHFLRRKVSLLPCHP-DIIPTLLPQRYNPWELNGKALQAGNQWYFFCHLTQ--------SRTSSNGYWNPIGADETVTS 91 79*************************999.89**************966667789******9855........577889************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 +g++vglkktL f g+ ++g +t+W+mhey+l LPERR02G16450.1 92 -GGRNVGLKKTLLFSIGEPSEGIRTNWIMHEYHL 124 .99*****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.09E-45 | 4 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 41.076 | 7 | 168 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-21 | 8 | 124 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0043067 | Biological Process | regulation of programmed cell death | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MGGATNLPPG FHFFPSDEEL VVHFLRRKVS LLPCHPDIIP TLLPQRYNPW ELNGKALQAG 60 NQWYFFCHLT QSRTSSNGYW NPIGADETVT SGGRNVGLKK TLLFSIGEPS EGIRTNWIMH 120 EYHLLDGDCM AGGSGNSTSS SSNRKSHRKR GHSSMESNNW VLCRVFESSC GSQVSFHGEG 180 TELSCLDEVF LSLDDYDEVS LPNK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-33 | 6 | 173 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-33 | 6 | 173 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-33 | 6 | 173 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-33 | 6 | 173 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-33 | 6 | 173 | 19 | 173 | NAC domain-containing protein 19 |
3swm_B | 4e-33 | 6 | 173 | 19 | 173 | NAC domain-containing protein 19 |
3swm_C | 4e-33 | 6 | 173 | 19 | 173 | NAC domain-containing protein 19 |
3swm_D | 4e-33 | 6 | 173 | 19 | 173 | NAC domain-containing protein 19 |
3swp_A | 4e-33 | 6 | 173 | 19 | 173 | NAC domain-containing protein 19 |
3swp_B | 4e-33 | 6 | 173 | 19 | 173 | NAC domain-containing protein 19 |
3swp_C | 4e-33 | 6 | 173 | 19 | 173 | NAC domain-containing protein 19 |
3swp_D | 4e-33 | 6 | 173 | 19 | 173 | NAC domain-containing protein 19 |
4dul_A | 3e-33 | 6 | 173 | 16 | 170 | NAC domain-containing protein 19 |
4dul_B | 3e-33 | 6 | 173 | 16 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR02G16450.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108454 | 0.0 | AK108454.1 Oryza sativa Japonica Group cDNA clone:002-143-C12, full insert sequence. | |||
GenBank | CT831377 | 0.0 | CT831377.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRN119H17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006647372.1 | 1e-134 | PREDICTED: NAC transcription factor 29-like isoform X2 | ||||
Swissprot | Q8GWK6 | 6e-62 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | A0A0D9VH21 | 1e-150 | A0A0D9VH21_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR02G16450.1 | 1e-151 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3667 | 36 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 1e-62 | xylem NAC domain 1 |
Publications ? help Back to Top | |||
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