PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G16170.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 736aa    MW: 77941.6 Da    PI: 10.0111
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G16170.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.27.8e-08224268244
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrw 44 
                      ++W++eEd  l+ +v+++G g W  I  +      R+  q++ rw
  LPERR02G16170.1 224 KPWSKEEDGELAAGVQKYGEGKWQDILDEYRfdSSRSYLQLQQRW 268
                      68*****************************99999999999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-11217275IPR009057Homeodomain-like
PROSITE profilePS5129410.279218276IPR017930Myb domain
SuperFamilySSF466895.89E-12221280IPR009057Homeodomain-like
SMARTSM007171.9E-7222274IPR001005SANT/Myb domain
PfamPF002491.0E-6224268IPR001005SANT/Myb domain
CDDcd116602.80E-15226273No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 736 aa     Download sequence    Send to blast
MKKEFPGQAP SRLHSETAPP PPAAPAAGVG KRKRSFSEDD AYLVLHRYQP ATILTMMQEM  60
GKHVQPGRRG IDWRALVRRT STGITSPREY QMLWRHFAYG HELVESVVPG ALPLEDDSDL  120
ECDIEIVPTP GNEALAEATS FAKSIISGSS REQASGQRVN SEANALNTQN EKIVRVPSDK  180
QLVPSQGLTN GTGPVSSLKQ PSNAGSSSDP FESNGHAKKK KKPKPWSKEE DGELAAGVQK  240
YGEGKWQDIL DEYRFDSSRS YLQLQQRWAF ICKRQGSTKP ANHKPVNATS SEDLNAAKKT  300
YMMFIDMPMK KKSGPQHSVQ HNAPMFTTTP EVKPAVASLP LPSPSPVVPV PSPSPVVLAP  360
SPSPVVPAPT PSPPPQLQQA PAQSAPPPSK VSNASNKTRN NSKKQVAQPS PVNNGPLSLQ  420
AIAFAAGGRI ATPSVATNLL KAAQSTKAVH IRSRGTGSSK SSTGSKTPSM AGEPGTQIGS  480
AQYLELQNTS GSSPVLTTHA TEQVPSVSEV AGVTPLGQSD GVHLSETKKP LNTMPVSGTS  540
DKMEIDDNSN YFAVTMEDLF PEDTKQEDAE DHKTEEAIDP KDADMLEFDR FVAQGCLNKD  600
YVDKSKTVKV APEVQGVVSS QKKQPKTLPT VGKSNPISAG ATVTTKKTKS PVPQGGMSSG  660
IVAAGNVGVL NRSGGKAHAP TTTATQNTVQ KQQNTSSKGN VPKIVAPGTV APANNRANTA  720
VNGASKANVP ASQKPA
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G16170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040380.0AP004038.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1004_H01.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006648724.20.0PREDICTED: MICAL-like protein 1
TrEMBLA0A0D9VGY90.0A0A0D9VGY9_9ORYZ; Uncharacterized protein
STRINGLPERR02G16170.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46843754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.12e-35MYB_related family protein