PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR02G12580.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | B3 | ||||||||
Protein Properties | Length: 238aa MW: 26313.1 Da PI: 8.9413 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.9 | 1.4e-16 | 31 | 127 | 1 | 93 |
EEEE-..-HHHHT.T-EE--HHH.HTT...---..--SEEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlks.grlvlpkkfaeeh...ggkkeesktltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f kvl+psdv+ +lv+p++++ + ++++e+ + +++ed sg+ W++++ +++ + ltkGW Fv+++gL+ gD+v F + g+ LPERR02G12580.1 31 FGKVLMPSDVSWVtEQLVIPNNHVGKLrvvDKDQEGFFVVVVEDgaVSGKIWRFRY-LNRNNVDHCLTKGWGCFVREKGLRPGDTVSFFRGGNA 123 67999****9965589********999**9888889999999*988899*******.566667799**********************977763 PP EE..E CS B3 89 efelv 93 +++ + LPERR02G12580.1 124 RER-L 127 333.3 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-20 | 26 | 140 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.08E-18 | 29 | 134 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.52E-17 | 30 | 132 | No hit | No description |
Pfam | PF02362 | 5.2E-13 | 31 | 130 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.5E-7 | 31 | 134 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.293 | 32 | 133 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MAASLPLPTS IHDGAEVPDD KDQVVEMKYL FGKVLMPSDV SWVTEQLVIP NNHVGKLRVV 60 DKDQEGFFVV VVEDGAVSGK IWRFRYLNRN NVDHCLTKGW GCFVREKGLR PGDTVSFFRG 120 GNARERLFIF CNRGTTTTTS HHCLPPPARD LPSSGHGEVG GSTPAARPPP PLVSPRRRRR 180 GTVHPEGEEP TTEMPMILES MTLVGAPPLA KRVRLFGVYI NVPPQQPSGG EPERKYNP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 8e-14 | 30 | 129 | 13 | 112 | DNA-binding protein RAV1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR02G12580.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624416.1 | 5e-71 | putative B3 domain-containing protein Os02g0455900 | ||||
Swissprot | Q6K3B1 | 5e-72 | Y2559_ORYSJ; Putative B3 domain-containing protein Os02g0455900 | ||||
TrEMBL | A0A0D9VFN8 | 1e-174 | A0A0D9VFN8_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR02G12580.1 | 1e-175 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15159 | 13 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01500.1 | 2e-16 | B3 family protein |