PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G12560.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family B3
Protein Properties Length: 264aa    MW: 29650.6 Da    PI: 10.4679
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G12560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.24.3e-1129114182
                      EEEE-..-HHHHT.T-EE--HHH.HTT...---..--SEEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
               B3   1 ffkvltpsdvlks.grlvlpkkfaeeh...ggkkeesktltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                      f+k l+psd+    + l +p ++a +     ++ e+ + + ++d    g+ W++++   k+s++  ltkGW  Fv+++gL +gD++ +
  LPERR02G12560.1  29 FDKFLLPSDMCMVtKKLFIPEEHAFKLgnmVKDREGYFVIFFQDgaVPGKLWRFRF--MKQSKKPALTKGWGCFVREKGLVAGDTISI 114
                      6778888887543377999999997777664444566677777744446*******..**************************9864 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.8E-1622137IPR015300DNA-binding pseudobarrel domain
CDDcd100179.92E-1127116No hitNo description
SuperFamilySSF1019364.12E-1227124IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.00429130IPR003340B3 DNA binding domain
PfamPF023626.6E-829114IPR003340B3 DNA binding domain
PROSITE profilePS508639.86930129IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MAASLPLSAN IVGVEDRHDM ELMEMEHLFD KFLLPSDMCM VTKKLFIPEE HAFKLGNMVK  60
DREGYFVIFF QDGAVPGKLW RFRFMKQSKK PALTKGWGCF VREKGLVAGD TISIFRGAVC  120
RRLFIFCRLG ARTRLSSATM VRHCLSMPHA TSTLAYNSQV VRPGTGMLAR NSASSGQERL  180
HVSDEVSGRV PRSHKASLAR ADAQPYNVSP HGRHRAMVHR QKEPMTEMPP ILESMFVGAT  240
PLVVKTVRLF GVNINVFPKQ ESDN
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G12560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625111.12e-84B3 domain-containing protein Os02g0455800
SwissprotQ6K3B22e-85Y2558_ORYSJ; B3 domain-containing protein Os02g0455800
TrEMBLA0A0D9VFN60.0A0A0D9VFN6_9ORYZ; Uncharacterized protein
STRINGLPERR02G12560.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151591316
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.14e-18B3 family protein