PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR02G12330.2

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

HB-PHD

Protein Properties

Length: 910aa MW: 100390 Da PI: 5.1298

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR02G12330.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	34.2	4.3e-11	708	753	7	52
--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 f + + L+ +F++++yps++++e LA++lgLt +qV+ WF R LPERR02G12330.2 708 FGPAINQKLKLYFNEDPYPSRATKENLAQELGLTFNQVSKWFSSTR 753 66666789**********************************8766 PP
2	PHD	43.1	9.4e-15	337	392	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C++Cg+ + +++++lCdg C++ fH++Cl+++l e++p+g wlC+ C++k LPERR02G12330.2 337 FCALCGSkdVTLKNDIILCDGiCDRGFHQYCLNPPLLAEDIPQGdeGWLCPACDCK 392 7****64445****88*****************999*****985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57903	1.71E-14	327	395	IPR011011	Zinc finger, FYVE/PHD-type
Gene3D	G3DSA:3.30.40.10	7.3E-14	333	391	IPR013083	Zinc finger, RING/FYVE/PHD-type
PROSITE profile	PS50016	11.056	335	392	IPR019787	Zinc finger, PHD-finger
Pfam	PF00628	5.3E-12	337	392	IPR019787	Zinc finger, PHD-finger
SMART	SM00249	1.5E-10	337	390	IPR001965	Zinc finger, PHD-type
CDD	cd15504	1.86E-26	337	389	No hit	No description
PROSITE pattern	PS01359	0	338	389	IPR019786	Zinc finger, PHD-type, conserved site
PROSITE profile	PS50071	13.297	699	759	IPR001356	Homeobox domain
SMART	SM00389	1.2E-11	702	763	IPR001356	Homeobox domain
CDD	cd00086	1.18E-11	704	757	No hit	No description
SuperFamily	SSF46689	5.13E-11	704	763	IPR009057	Homeodomain-like
Pfam	PF00046	1.7E-8	708	753	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	9.4E-12	712	766	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 910 aa Download sequence Send to blast
MEEVSRAHVT AYSPRLSSPT RLPSSVPPAA QGGGARLTVA ASRGRQPVEG RAQGPTWCRW 60 AAGWCIEQEA GGRLTDARRP ASAARTDLSA MDKTPTSDLV LALLANDNAG SNAGSAQEPL 120 TTNGKNSGMR NRFKQTVNRG RKGSQISPSK TYPLRSSRSS VRVLRSASKK RNGTPIVPTN 180 DNIAVQQAVK KRKRSKPLRP EDSRLRSASK KVNKANTELV NDSAGVQPAA KKTRGRPPKG 240 GTPKNEYLVI RKRVRYILNR MNYEQSLIQA YASEGWKGQS LEKIRPEKEL ERAKVEILRC 300 KSRIREAFRN LDCLLSEGKM EESLFDSSGE ISSEDIFCAL CGSKDVTLKN DIILCDGICD 360 RGFHQYCLNP PLLAEDIPQG DEGWLCPACD CKIDCIDVLN ELQEVKLSIH DSWEKVFPEA 420 ASFANGSKQI DVSDLPSDDS ADDDYDPDLA QGRNVDEEKS SGEDESEGSD SDHSSSEDSE 480 SSENRKSKTS KNGRTIDDIG LPSEDSEDGD FDPASPDSDK DQNDESNSDQ SEQSDFTSDS 540 DDFCAEIAKS CGQDEISGPS LSQVRTVDPT DGSAFDSEPN AENLNLAFME TDLEQDMVLP 600 VSSKRQVERL DYKKLYDEAY GKVSSDSSDD EEWSGNSTPQ KGKLEDSETD SLAESPQRGK 660 GFSRRAPVRY QNGEHTQQNV RRGDSVGDQQ TEVLCSNSNG STARKRHFGP AINQKLKLYF 720 NEDPYPSRAT KENLAQELGL TFNQVSKWFS STRHYLRVAT TKKENNIENF TAENNNSNTV 780 DSIKLRGLNE MVMEKVSVDR NDMVSEERTG QSNLNEGIPL RHDTSGEQSV VVTPVLHQGS 840 CIISKEIDLP KCETRDNQGN DSSSNVGTPR VKSAEKMVPG LENADEARRK AVQRELRKMK 900 TGRTKSPMVY

Sequence ? help Back to Top

Protein Sequence Length: 910 aa Download sequence Send to blast

MEEVSRAHVT AYSPRLSSPT RLPSSVPPAA QGGGARLTVA ASRGRQPVEG RAQGPTWCRW  60
AAGWCIEQEA GGRLTDARRP ASAARTDLSA MDKTPTSDLV LALLANDNAG SNAGSAQEPL  120
TTNGKNSGMR NRFKQTVNRG RKGSQISPSK TYPLRSSRSS VRVLRSASKK RNGTPIVPTN  180
DNIAVQQAVK KRKRSKPLRP EDSRLRSASK KVNKANTELV NDSAGVQPAA KKTRGRPPKG  240
GTPKNEYLVI RKRVRYILNR MNYEQSLIQA YASEGWKGQS LEKIRPEKEL ERAKVEILRC  300
KSRIREAFRN LDCLLSEGKM EESLFDSSGE ISSEDIFCAL CGSKDVTLKN DIILCDGICD  360
RGFHQYCLNP PLLAEDIPQG DEGWLCPACD CKIDCIDVLN ELQEVKLSIH DSWEKVFPEA  420
ASFANGSKQI DVSDLPSDDS ADDDYDPDLA QGRNVDEEKS SGEDESEGSD SDHSSSEDSE  480
SSENRKSKTS KNGRTIDDIG LPSEDSEDGD FDPASPDSDK DQNDESNSDQ SEQSDFTSDS  540
DDFCAEIAKS CGQDEISGPS LSQVRTVDPT DGSAFDSEPN AENLNLAFME TDLEQDMVLP  600
VSSKRQVERL DYKKLYDEAY GKVSSDSSDD EEWSGNSTPQ KGKLEDSETD SLAESPQRGK  660
GFSRRAPVRY QNGEHTQQNV RRGDSVGDQQ TEVLCSNSNG STARKRHFGP AINQKLKLYF  720
NEDPYPSRAT KENLAQELGL TFNQVSKWFS STRHYLRVAT TKKENNIENF TAENNNSNTV  780
DSIKLRGLNE MVMEKVSVDR NDMVSEERTG QSNLNEGIPL RHDTSGEQSV VVTPVLHQGS  840
CIISKEIDLP KCETRDNQGN DSSSNVGTPR VKSAEKMVPG LENADEARRK AVQRELRKMK  900
TGRTKSPMVY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	189	194	KKRKRS
2	189	196	KKRKRSKP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor involved in the regulation of gibberrelin (GA) signaling. Binds to the 5'-GATC-3' motif of HD16/EL1 promoter. Functions as a positive regulator of GA signaling by suppressing the expression of HD16/EL1, a negative regulator of GA signaling. {ECO:0000269\|PubMed:21951842}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR02G12330.2

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by gibberellin. {ECO:0000269\|PubMed:21951842}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB081340	0.0	AB081340.1 Oryza sativa Japonica Group HAZ1 mRNA for PHD-finger family homeodomain protein, complete cds.
GenBank	AK121314	0.0	AK121314.1 Oryza sativa Japonica Group cDNA clone:J023113A13, full insert sequence.
GenBank	FJ940197	0.0	FJ940197.1 Oryza sativa Japonica Group clone KCS150D11 PHD-finger family homeodomain protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015644127.1	0.0	homeobox protein HAZ1 isoform X1
Swissprot	Q8H991	0.0	HAZ1_ORYSJ; Homeobox protein HAZ1
TrEMBL	A0A0D9VFK8	0.0	A0A0D9VFK8_9ORYZ; Uncharacterized protein
STRING	LPERR02G12330.2	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4393	37	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	7e-88	Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Wen BQ,Xing MQ,Zhang H,Dai C,Xue HW Rice homeobox transcription factor HOX1a positively regulates gibberellin responses by directly suppressing EL1. J Integr Plant Biol, 2011. 53(11): p. 869-78 [PMID:21951842]