PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR02G11880.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

G2-like

Protein Properties

Length: 496aa MW: 53843.8 Da PI: 8.9435

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR02G11880.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.7	4.7e-32	320	375	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 kpr++W+peLH+rF++a++qLGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ LPERR02G11880.1 320 KPRRCWAPELHRRFLQALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 375 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.295	317	377	IPR017930	Myb domain
SuperFamily	SSF46689	3.94E-17	318	378	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.8E-28	318	378	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.4E-27	320	375	IPR006447	Myb domain, plants
Pfam	PF00249	2.4E-6	322	373	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 496 aa Download sequence Send to blast
MESPAEYSPH LLHFTNLRPS QPARSPVHST RRHLPCVRRD DTPVRKRFAP YATPRPRFPS 60 LPFFLPFPSS SSHRIDGNRN LSRRRSMEVG RDGARRRCRE YLVALEEERR KIQVFQRELP 120 LCFDLVTQTI EGMRSQMDGA GSEETVSDQG PPPVLEEFIP LKPSLSLSSD EDEESTHAKK 180 EEAAETSERH SPPQPEASKK VTPDWLQSVQ LWSQEPHPSS PTPTPTPLAK DVPCKPVALN 240 ARKGGGAFHP FEKEKQRVAA ELPASSTTAA AAASSTAVGD SGGDKATTDD ETENHRDETD 300 KVDAKDKEGQ SQSSTQANRK PRRCWAPELH RRFLQALQQL GGSHVATPKQ IRELMKVDGL 360 TNDEVKSHLQ KYRLHTRRPS STGHSSAGAG AGAAVVAPPA PQFVVVGSIW VPPPEYAAAA 420 AAQHAAAAAD ASGSANPVYA PVAMLPPGLQ PHSHRKQQQQ QGQRSHVSEG RRSGDAGDGS 480 SSSPAVSSSS TQTTSA

Sequence ? help Back to Top

Protein Sequence Length: 496 aa Download sequence Send to blast

MESPAEYSPH LLHFTNLRPS QPARSPVHST RRHLPCVRRD DTPVRKRFAP YATPRPRFPS  60
LPFFLPFPSS SSHRIDGNRN LSRRRSMEVG RDGARRRCRE YLVALEEERR KIQVFQRELP  120
LCFDLVTQTI EGMRSQMDGA GSEETVSDQG PPPVLEEFIP LKPSLSLSSD EDEESTHAKK  180
EEAAETSERH SPPQPEASKK VTPDWLQSVQ LWSQEPHPSS PTPTPTPLAK DVPCKPVALN  240
ARKGGGAFHP FEKEKQRVAA ELPASSTTAA AAASSTAVGD SGGDKATTDD ETENHRDETD  300
KVDAKDKEGQ SQSSTQANRK PRRCWAPELH RRFLQALQQL GGSHVATPKQ IRELMKVDGL  360
TNDEVKSHLQ KYRLHTRRPS STGHSSAGAG AGAAVVAPPA PQFVVVGSIW VPPPEYAAAA  420
AAQHAAAAAD ASGSANPVYA PVAMLPPGLQ PHSHRKQQQQ QGQRSHVSEG RRSGDAGDGS  480
SSSPAVSSSS TQTTSA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-12	320	373	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-12	320	373	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-12	320	373	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-12	320	373	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that may play a role in response to nitrogen. May be involved in a time-dependent signaling for transcriptional regulation of nitrate-responsive genes. Binds specifically to the DNA sequence motif 5'-GAATC-3' or 5'-GAATATTC-3'. Represses the activity of its own promoter trough binding to these motifs.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00160	DAP	Transfer from AT1G25550	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR02G11880.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by nitrate. {ECO:0000269\|PubMed:23324170}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015623779.1	1e-161	transcription factor NIGT1
Swissprot	Q6Z869	1e-162	NIGT1_ORYSJ; Transcription factor NIGT1
TrEMBL	A0A0D9VFE9	0.0	A0A0D9VFE9_9ORYZ; Uncharacterized protein
STRING	LPERR02G11880.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6470	37	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25550.1	5e-66	G2-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Sawaki N, et al. A nitrate-inducible GARP family gene encodes an auto-repressible transcriptional repressor in rice. Plant Cell Physiol., 2013. 54(4): p. 506-17 [PMID:23324170]