PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LPERR02G10920.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 229aa MW: 25362.3 Da PI: 7.914 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 66.3 | 8.7e-21 | 14 | 148 | 1 | 126 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k..kvka....eekew.yfFskrdkkyatgkrknr.atksgyWka 85 l pGf+F+Ptde lv +yL ++++g++l+++ v+ d k+ Pw L + k + +++e yf ++++ + a++ r r ++ g+W + LPERR02G10920.1 14 LSPGFKFEPTDEMLVEHYLLPHLRGENLPFAGVVFVDDPRKLPPWALLdRhgK--GgdrdRDREGaYFIAPAA-AVAKDGRLARsVAGGGRWVN 104 579***************************8888888**********633331..233333334426666655.556666777758999***98 PP NAM 86 tgk...dkevlskkgelvglkktLvfykgrapkgektdWvmhey 126 + k + +v++ +++ ++k ++ f++ +++ t Wvmhe LPERR02G10920.1 105 QKKregEGTVVVGGEAFRWVKSSFSFHRDGDRRRGATGWVMHEV 148 777444567888788889*********877777779******95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.05E-30 | 7 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 24.548 | 14 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-14 | 16 | 147 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 229 aa Download sequence Send to blast |
MAVVKTTAAE AVGLSPGFKF EPTDEMLVEH YLLPHLRGEN LPFAGVVFVD DPRKLPPWAL 60 LDRHGKGGDR DRDREGAYFI APAAAVAKDG RLARSVAGGG RWVNQKKREG EGTVVVGGEA 120 FRWVKSSFSF HRDGDRRRGA TGWVMHEVAF VPPPGSAVAA THRACHIFFT SHGQHRKRIP 180 DGYDAAVKKE PLEKPLDHQE QSNQDQEQSN HQDQEQRIER DGSGEAVSR |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LPERR02G10920.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015649258.1 | 6e-48 | uncharacterized protein LOC107275324 | ||||
TrEMBL | A0A0D9VF11 | 1e-167 | A0A0D9VF11_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR02G10920.1 | 1e-167 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14326 | 11 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G10480.1 | 4e-08 | NAC domain containing protein 50 |