PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR02G10910.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | NAC | ||||||||
Protein Properties | Length: 338aa MW: 37858.9 Da PI: 4.2824 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 47.9 | 4.2e-15 | 10 | 138 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvka.eekewyfFskrdkkyatgkrknr.atksgyWkatgk 88 l pG++F+Ptde lv +L + ++++ l+l+ v+ d + Pw+L + yf s++ + r++r ++ g+W ++ + LPERR02G10910.1 10 LSPGYKFDPTDEMLVELFLLPFLRREGLPLSGVVFLHDTRILPPWTLLDrhglD--VvDGAGAYFISPAVAR-----RQSRsVAGGGRWVKQQR 96 579***************************99888889999******6323321..2355688999998664.....677758889***98876 PP NAM 89 ...dkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 + ev + +++ ++k ++ f++ + ++ t Wvmhe + LPERR02G10910.1 97 alrEGEVAVGGEAFRWVKSSFSFHRDGDGRSGATGWVMHEIS 138 454778888788889*********887777789*******86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-26 | 4 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 24.08 | 10 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.5E-12 | 12 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MVTAAESQGL SPGYKFDPTD EMLVELFLLP FLRREGLPLS GVVFLHDTRI LPPWTLLDRH 60 GLDVVDGAGA YFISPAVARR QSRSVAGGGR WVKQQRALRE GEVAVGGEAF RWVKSSFSFH 120 RDGDGRSGAT GWVMHEISVV PPPGSAIAST HTACRIFFSG KGRNRKRVPD GYVVGVNQEY 180 AFVPQQQQSS QDCFLQEPLV ESQQFLDQMQ SNQGQEYGGA CYTQQNNQDQ EQSNQEYFPE 240 AEQSNQQFLD QLLPALEQSN QDVYIDQNLC YIAPEQQQQQ QQNNQELVCE DLGRLVFQGD 300 ATQWQQPDGL DGGGGALSWR EYMDDAEMQR IIDGLLED |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR02G10910.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0D9VF10 | 0.0 | A0A0D9VF10_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR02G10910.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14326 | 11 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33280.1 | 1e-08 | NAC domain containing protein 15 |