PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G09860.4
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 557aa    MW: 61556.9 Da    PI: 8.5551
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G09860.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.22.2e-14233275145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++W++eE+++l++a + +G++ W++  ++++ gRt + +k++w+
  LPERR02G09860.4 233 KQAWSQEEELRLIRAQQTYGNK-WSAMVEHFP-GRTNNAIKEHWR 275
                      799*******************.*********.***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.47170229IPR001005SANT/Myb domain
CDDcd001672.28E-6173227No hitNo description
PROSITE profilePS500907.166189227IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.7E-14189236IPR009057Homeodomain-like
SuperFamilySSF466891.15E-22207283IPR009057Homeodomain-like
PROSITE profilePS5129420.696228282IPR017930Myb domain
SMARTSM007171.2E-11232280IPR001005SANT/Myb domain
PfamPF002491.9E-12233275IPR001005SANT/Myb domain
CDDcd001672.57E-10235275No hitNo description
Gene3DG3DSA:1.10.10.609.8E-19237283IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MPSQPCQKQV VGSCFYCLTI TRRERTAQIS PLLQPVPSDQ PHLAPALHFL VLAAVQAKSS  60
SAPQAQKRRF HPLFHPPPQT LFSPKHPPLA SSPSACTRSF GLAMGDAPGG FGESNDVYAA  120
MSLSGEGDTL KGTYKHCQEE QLGKIGAGGP CKKHFQNVKD KFNIEKSGKT RQPWSREESD  180
FNFFCFLYED KILIQMINSG QTNWGTVACA IPGRNAQQCR LRWTCTLDPA INKQAWSQEE  240
ELRLIRAQQT YGNKWSAMVE HFPGRTNNAI KEHWRGPMKR KLNSYLSSGF LEKIPDLPAS  300
LKSKHGARSK SSGLFEKSSG LPENLSVSQN SDSDILQQCD GSSDENQLLS DIQGRLKSKQ  360
GTSSKSKQGA SSKCDGLRAR LKSKQGTNKK SKQEFIKPRE NTDQSEGECA EFMCTKGPDT  420
DSVDVSQRIK DRVNERKRAR KRLVLLSSPV ELKVSAMAKS ERPQQEGKQM SPEVNIISPP  480
AILQEFSPEV PSECEKMVEP LVADCKQAKN VCSSLKTSDP CTLEQHLADI SDLLDMSYCD  540
GLMIIPPAGC ANDDCFV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-201712847110B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1434442ERKRARKRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G09860.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006647149.21e-152PREDICTED: transcription factor MYB28-like isoform X2
RefseqXP_015689000.11e-151PREDICTED: transcription factor MYB28-like isoform X1
TrEMBLA0A0D9VEL90.0A0A0D9VEL9_9ORYZ; Uncharacterized protein
STRINGLPERR02G09860.70.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.14e-34myb domain protein 3r-4