PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G09170.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 366aa    MW: 40184.3 Da    PI: 7.0174
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G09170.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.11.2e-51101441128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                      +ppGfrFhPtdeel+ +yLkkkv+ + ++l +vi+e+d++k+ePwdL  + ++ + +++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+
  LPERR02G09170.1  10 VPPGFRFHPTDEELLYYYLKKKVAYEAIDL-DVIREIDLNKLEPWDLIdRcRIGTgQQEEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKA 102
                      69****************************.9***************732445443666*********************************** PP

              NAM  92 vlsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++       +g+ +gl+ktLvfy+grap+g+ktdW+mheyrl
  LPERR02G09170.1 103 IFLGsgsggGGRRIGLRKTLVFYTGRAPHGKKTDWIMHEYRL 144
                      **98788777778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.58E-588164IPR003441NAC domain
PROSITE profilePS5100558.10810164IPR003441NAC domain
PfamPF023652.2E-2711144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MHPNGAPLTV PPGFRFHPTD EELLYYYLKK KVAYEAIDLD VIREIDLNKL EPWDLIDRCR  60
IGTGQQEEWY FFSHKDKKYP TGTRTNRATA AGFWKATGRD KAIFLGSGSG GGGRRIGLRK  120
TLVFYTGRAP HGKKTDWIMH EYRLDDDNVD IPEEGWVVCR VFKKKSIHPR GLFDHQPDMA  180
AAAGGEDDEL RHHLYGAADS GMSPAAAVDQ KHVLHQQQQL TSAHGGGGFV VPAFDHSMHL  240
PQLADATPAS CNGGGHVAFA SSMNTLDAVG CGAQNMMKQL ASAANSGGEI LMSAVVDGGG  300
RFGAAADWSI LDKLLASHQN LDQIFHGKTH HHQQQQQMGI DTSSLQRLPL HHYLGLEAAD  360
LLKFAM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-50816615167NO APICAL MERISTEM PROTEIN
1ut4_B8e-50816615167NO APICAL MERISTEM PROTEIN
1ut7_A8e-50816615167NO APICAL MERISTEM PROTEIN
1ut7_B8e-50816615167NO APICAL MERISTEM PROTEIN
4dul_A8e-50816615167NAC domain-containing protein 19
4dul_B8e-50816615167NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G09170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624882.10.0NAC domain-containing protein 76-like
RefseqXP_025878787.10.0NAC domain-containing protein 76-like
TrEMBLA0A0D9VEC60.0A0A0D9VEC6_9ORYZ; Uncharacterized protein
STRINGLPERR02G09170.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34613781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.32e-69NAC family protein