PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LPERR02G08660.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 518aa MW: 56556.4 Da PI: 6.3332 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 99.9 | 1.7e-31 | 117 | 170 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+ave+LGG+e+AtPk +l++m+v gL+++hvkSHLQ+YR+ LPERR02G08660.1 117 PRLRWTPDLHMAFVHAVERLGGQERATPKLVLQMMNVRGLSIAHVKSHLQMYRS 170 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.0E-29 | 113 | 171 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.601 | 113 | 173 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.02E-14 | 116 | 171 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.4E-22 | 117 | 172 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.0E-9 | 118 | 169 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 518 aa Download sequence Send to blast |
MKDKEVVEIE DDETKRSVDK NQLDLNELVM DVESEEGEVG DDEDDDDEED DDDDGGSTTD 60 VAGSRSSSNN SSTNNNVSES KLKGCEKDGV GGDAEGNNNG GEHRIPSVRQ YNRSKLPRLR 120 WTPDLHMAFV HAVERLGGQE RATPKLVLQM MNVRGLSIAH VKSHLQMYRS KKLDHEGRQI 180 RGAIASVFSP MDFHMMRGDR RFHDMLLQRA AALSSRPDHG GFFPPRTGGG GGGLPEASRL 240 YGLLQHRQPP MSQTFDFKNT SFRNQEWSFS FNQCDMSSRR EMKPSSSTTA TPPAHLLAAS 300 SSAIRRWPSF ADGAGDQISR PEAGRFGYYT GNGTSFRTLI TRAAMAPPPA TMSGGDRRLP 360 FVWHGGDGGG GAKINRSSSD PVVIDEALDS RSLEHHQMKL IEPRSCTPST TPAGKRPPPD 420 LQLSLSPTTT ASAAKRSKTT ATTTSAAAGE QQQEAEMDRC NNSKLSISLS LSPPAPAANN 480 SMDLSSMHHH HQQQEKTRGS SSEEDADLGQ TRVCIYFA |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-18 | 118 | 172 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-18 | 118 | 172 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-18 | 118 | 172 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-18 | 118 | 172 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LPERR02G08660.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006648492.1 | 1e-164 | PREDICTED: uncharacterized protein LOC102717409 | ||||
TrEMBL | A0A0D9VE68 | 0.0 | A0A0D9VE68_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR02G08660.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2754 | 36 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G38300.1 | 7e-35 | G2-like family protein |