PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR02G08390.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | BES1 | ||||||||
Protein Properties | Length: 303aa MW: 30528.7 Da PI: 6.3537 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 172.3 | 2.5e-53 | 22 | 129 | 2 | 116 |
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssasaspessl 94 g r ptw+ErEnn+rRERrRRai+a iyaGLRa+Gny lpk++DnneVl+ALc+eAGw+v++DGttyr g+kp+ e ++ g+sa +sp+ss LPERR02G08390.1 22 GRVRVPTWRERENNRRRERRRRAITANIYAGLRAYGNYTLPKHCDNNEVLRALCHEAGWTVQPDGTTYRTGFKPPaAELDQFGRSAPVSPCSSC 115 67799**********************************************************************9999**************9 PP DUF822 95 qsslkssalaspvesysaspks 116 q s+ + s s ++s LPERR02G08390.1 116 QVSP---RKGS-----SFLLNS 129 9222...2222.....222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 8.3E-54 | 23 | 161 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MEGGAAGGGG GGEGMGNGGG GGRVRVPTWR ERENNRRRER RRRAITANIY AGLRAYGNYT 60 LPKHCDNNEV LRALCHEAGW TVQPDGTTYR TGFKPPAAEL DQFGRSAPVS PCSSCQVSPR 120 KGSSFLLNSG AAASSSSQIA LGGFPGGGEG SSLIPWLKTL SASNGGGGGI AGGASSSSSK 180 LPAYHYPYFG FGGGSISAPV PAATAAAAAG VGAGNDAAAW LAGFQINSAG PSRMGSPLQS 240 GICSPVAVAG DVKMEDAAAA AAPAARIVSG MVNAWEGETI HEECEVSDDD DLELTLGTRA 300 DDH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 7e-20 | 25 | 100 | 372 | 447 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 7e-20 | 25 | 100 | 372 | 447 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 7e-20 | 25 | 100 | 372 | 447 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 7e-20 | 25 | 100 | 372 | 447 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May function in brassinosteroid signaling. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR02G08390.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025813584.1 | 2e-63 | protein BZR1 homolog 3 | ||||
Swissprot | Q5Z9E5 | 3e-62 | BZR3_ORYSJ; Protein BZR1 homolog 3 | ||||
TrEMBL | A0A0D9VE45 | 0.0 | A0A0D9VE45_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR02G08390.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1366 | 38 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18890.1 | 2e-32 | BES1/BZR1 homolog 3 |
Publications ? help Back to Top | |||
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