PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LPERR02G07780.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 340aa MW: 36750.9 Da PI: 10.0578 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 54.8 | 1.3e-17 | 176 | 209 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C+ttkTplWR+gp g+k+LCnaCG+++rk + LPERR02G07780.1 176 CSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKAR 209 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 3.94E-13 | 167 | 210 | No hit | No description |
SMART | SM00401 | 6.5E-19 | 170 | 221 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.2E-14 | 174 | 209 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 12.268 | 174 | 206 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 1.26E-12 | 175 | 203 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 176 | 201 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.5E-15 | 176 | 209 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 340 aa Download sequence Send to blast |
MSTIYMSQIP ATLPLMEGDQ DQGLFPAFHR AKDPPILFPF MIDSSVEHQG QSYGDQTLRR 60 QQVLGESNQQ FNDHMMMGGS DVFLAPSPFR PTIQSIGSDM IQRSSYDLYD IENKHVNGST 120 SKWMSTPPVK MKIIRKGVTT DPEGGAVVRK PRRRAQTHQD ESQQHQQQAM GVVRVCSDCN 180 TTKTPLWRSG PCGPKSLCNA CGIRQRKARR AMAAAANGGA PPSKIAVTAN KPAKMKEKRA 240 DVDRSLPFKK RSKMVVDHAT AAASIAVKST AAAAAVAPKN DQDHGVISEN VNAAAAAADQ 300 SPTKAVSPSP APAFFHGLPR DEITDAAMLL MTLSCGLVRS |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (By similarity). Influences the expression of nuclear encoded chloroplast-targeted genes. Regulates chloroplast development and promotes chlorophyll accumulation. Modulates plant architecture (e.g. height, length and width of leaf blades, and flowering tillers production) and represses tillering, probably by modulating number of cells. Promotes senescence. Involved in grain filling, panicle development and starch production (PubMed:23548780). {ECO:0000250|UniProtKB:Q9SZI6, ECO:0000269|PubMed:23548780}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LPERR02G07780.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by light, nitrogen, and cytokinin (benzyladenine) treatments, but repressed by darkness and gibberellin (GA). {ECO:0000269|PubMed:23548780}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK099607 | 0.0 | AK099607.1 Oryza sativa Japonica Group cDNA clone:J013048G01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006648462.1 | 1e-176 | PREDICTED: putative GATA transcription factor 22 | ||||
Swissprot | Q6YW48 | 1e-167 | CGA1_ORYSJ; Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1 | ||||
TrEMBL | A0A0D9VDV3 | 0.0 | A0A0D9VDV3_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR02G07780.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1893 | 38 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G56860.1 | 1e-16 | GATA family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|