PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR02G05150.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | CO-like | ||||||||
Protein Properties | Length: 211aa MW: 22635.8 Da PI: 8.161 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.9 | 1.7e-07 | 53 | 98 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e ++ C+ + lC+ C +H + H++vp+ LPERR02G05150.1 53 VWVCEVCEISPAAVTCKADAAALCAACDADIHPSdvlarrHERVPV 98 689******99*********************66777778999986 PP | |||||||
2 | CCT | 70.6 | 3.9e-24 | 151 | 194 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R+a+l+RY+eKrk+R+FeK+irY+sRKa+Ae+RpRvKGrF+k+a LPERR02G05150.1 151 RAARLMRYREKRKNRRFEKTIRYASRKAYAETRPRVKGRFAKRA 194 99****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 0.078 | 11 | 55 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.552 | 51 | 98 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.6E-5 | 52 | 98 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.3E-5 | 56 | 98 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 4.6E-18 | 151 | 193 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.807 | 151 | 193 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MELGLGRYWG VGGRRCGACA VAPAAVHCRT CGGGEYLCAG CDADHARAGH ERVWVCEVCE 60 ISPAAVTCKA DAAALCAACD ADIHPSDVLA RRHERVPVQP IGSDATDADM LLLGGEKDSS 120 AAGDDLAGGC GKEVKLMYFG ESHVSSMDVG RAARLMRYRE KRKNRRFEKT IRYASRKAYA 180 ETRPRVKGRF AKRADDAAPP ERVMLDFAAG S |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR02G05150.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004838 | 2e-71 | AP004838.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0504A05. | |||
GenBank | AP014958 | 2e-71 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012610 | 2e-71 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623284.1 | 8e-49 | zinc finger protein CONSTANS-LIKE 3 | ||||
Swissprot | Q9FHH8 | 3e-29 | COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5 | ||||
TrEMBL | A0A0D9VCW3 | 1e-149 | A0A0D9VCW3_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR02G05150.1 | 1e-150 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3844 | 23 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57660.1 | 2e-21 | CONSTANS-like 5 |
Publications ? help Back to Top | |||
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