PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G04910.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family Trihelix
Protein Properties Length: 357aa    MW: 37545.7 Da    PI: 4.0183
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G04910.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix285.9e-0975151168
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.........rergferspkqCkekwenlnkrykkikege 68 
                      +Wt  e+laL++ +  +++  +r+ ++ ++W+ v++++         r+    r + +C+ +we l ++y +++++ 
  LPERR02G04910.1  75 EWTAAETLALVAEVAAVDDGWSRSVSAFQKWAIVAENLasaasssrgRASARGRAASECRRRWEALVGEYSAVRRRG 151
                      5********************************************998888899****************9998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.02776141IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MDPDSTERPC IIQALPALPS SPSPSFSDLP TMVQALPAAT DPPPTLAAAA TPGPRPRRGP  60
DPPSPRRTRS GGLPEWTAAE TLALVAEVAA VDDGWSRSVS AFQKWAIVAE NLASAASSSR  120
GRASARGRAA SECRRRWEAL VGEYSAVRRR GGGGGGYWEM SAAARRKAGL PADFDAEVYG  180
AMEALTLVEE ALLTGGEEDK GEGGEEDEGD GDGEIGEEGD GGEVGEDGEE EDGDEKVEEE  240
DDGNGGEDAE ADGGNGTASD DLEVGKMEAN NEAMKSQTNA CQLANKLQEN AQHIHTLLKE  300
EVGEDQNQNL AISSDAMETT RQKADELIKS LSGLVSYLNQ FTDLIKEHGF ENVVGMS
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G04910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1303479e-90BT130347.1 Oryza sativa clone RRlibD00828 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626063.11e-144trihelix transcription factor ASR3 isoform X1
TrEMBLA0A0D9VCT00.0A0A0D9VCT0_9ORYZ; Uncharacterized protein
STRINGLPERR02G04910.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63532433