PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR02G04650.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

NF-YC

Protein Properties

Length: 368aa MW: 40499.7 Da PI: 4.9021

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR02G04650.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	177	1.8e-55	175	279	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 ql+ fw++q ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdi+df LPERR02G04650.1 175 QLREFWANQmeeIEQTTDFKNHTLPLARIKKIMKADEDVRMISAEAPVVFAKACEVFILELTLRSWMHTEENKRRTLQKNDIAAAITRTDIYDF 268 89****9777789*************************************************************************** PP NF-YC 92 lvdivprdelk 102 lvdivprde+k LPERR02G04650.1 269 LVDIVPRDEMK 279 ******975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.01E-33	149	269	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	4.1E-37	189	261	IPR009072	Histone-fold
Pfam	PF00808	1.4E-20	197	260	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence Send to blast
MDTTPTCTHQ AHVLVSLSLL ALTLLLPRVV LTEGDLVSSL SLRRRELDCS SRVESRREGS 60 AAWGGEPSTR ASVLRAGDPA VSRVFGSGRT RPDMEPSSQP QPVMGVAAGG SQAYPPGAAY 120 PPQGMVPGAP AVVPPGSQPS APFPTNPAQL SAQHQLVYQQ AQQFHQQLQQ QQQQQLREFW 180 ANQMEEIEQT TDFKNHTLPL ARIKKIMKAD EDVRMISAEA PVVFAKACEV FILELTLRSW 240 MHTEENKRRT LQKNDIAAAI TRTDIYDFLV DIVPRDEMKE EGLGLPRVGL PPNMGAAADT 300 YPYYYVPPQQ GPGSGMMYGG QQGHPVTYVW QQPQEQQDEP PEEQQQSLPE IIKVEADVES 360 VRTAAAEA

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence Send to blast

MDTTPTCTHQ AHVLVSLSLL ALTLLLPRVV LTEGDLVSSL SLRRRELDCS SRVESRREGS  60
AAWGGEPSTR ASVLRAGDPA VSRVFGSGRT RPDMEPSSQP QPVMGVAAGG SQAYPPGAAY  120
PPQGMVPGAP AVVPPGSQPS APFPTNPAQL SAQHQLVYQQ AQQFHQQLQQ QQQQQLREFW  180
ANQMEEIEQT TDFKNHTLPL ARIKKIMKAD EDVRMISAEA PVVFAKACEV FILELTLRSW  240
MHTEENKRRT LQKNDIAAAI TRTDIYDFLV DIVPRDEMKE EGLGLPRVGL PPNMGAAADT  300
YPYYYVPPQQ GPGSGMMYGG QQGHPVTYVW QQPQEQQDEP PEEQQQSLPE IIKVEADVES  360
VRTAAAEA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	4e-56	183	275	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	247	253	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269\|PubMed:26542958}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR02G04650.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269\|PubMed:26542958}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK243429	0.0	AK243429.1 Oryza sativa Japonica Group cDNA, clone: J100067L16, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006646944.1	1e-143	PREDICTED: nuclear transcription factor Y subunit C-2
Refseq	XP_015689486.1	1e-143	PREDICTED: nuclear transcription factor Y subunit C-2
Swissprot	Q655V5	1e-127	NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4
TrEMBL	A0A0D9VCP7	0.0	A0A0D9VCP7_9ORYZ; Uncharacterized protein
STRING	LPERR02G04650.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2703	37	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	2e-69	nuclear factor Y, subunit C2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]