PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G04310.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 267aa    MW: 31082.9 Da    PI: 6.996
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G04310.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM155.42.5e-48121431128
              NAM   1 lppGfrFhPtdeelvveyLk.kkvegkklelee....vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                      lp+GfrFhP+d+elv +yL   k++g++l+ +     ++ +vd++k+ePwdLp+ +  + kewyf+  +d++yatgkr+nrat+sgyWkatg+d
  LPERR02G04310.1  12 LPAGFRFHPRDDELVIDYLLaCKLHGDPLQRQGcnipTLIDVDLNKCEPWDLPEIACIGGKEWYFYNLKDRRYATGKRTNRATESGYWKATGRD 105
                      799*************99751678888865544333247789***********7666789********************************** PP

              NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +e+++ k+ lvg++ktLvfy+grap+ge+tdWvmhe+r+
  LPERR02G04310.1 106 REITR-KELLVGMRKTLVFYRGRAPRGERTDWVMHEFRV 143
                      ****9.9999***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-573168IPR003441NAC domain
PROSITE profilePS5100552.79712168IPR003441NAC domain
PfamPF023651.1E-2213143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MSWSLSMVEA RLPAGFRFHP RDDELVIDYL LACKLHGDPL QRQGCNIPTL IDVDLNKCEP  60
WDLPEIACIG GKEWYFYNLK DRRYATGKRT NRATESGYWK ATGRDREITR KELLVGMRKT  120
LVFYRGRAPR GERTDWVMHE FRVENHHGNH HHNQHLKEDW VLCRVFYKSR AELAAAPTME  180
HPHPPRYISG TTSRPPLPPP INSSISFNPD VLNDDHQVTR NDDLEVIKRE PSSLQEKGLA  240
HDQDEGIEGY YSFTDNASSE TWNLFRQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-45816911169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G04310.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0048631e-63AP004863.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0023I17.
GenBankAP0058041e-63AP005804.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0085K21.
GenBankAP0149581e-63AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624259.11e-118NAC domain-containing protein 21/22 isoform X2
SwissprotQ84TE61e-77NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A0D9VCK20.0A0A0D9VCK2_9ORYZ; Uncharacterized protein
STRINGLPERR02G04310.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.29e-75NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]