PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR02G04310.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | NAC | ||||||||
Protein Properties | Length: 267aa MW: 31082.9 Da PI: 6.996 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 155.4 | 2.5e-48 | 12 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLk.kkvegkklelee....vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lp+GfrFhP+d+elv +yL k++g++l+ + ++ +vd++k+ePwdLp+ + + kewyf+ +d++yatgkr+nrat+sgyWkatg+d LPERR02G04310.1 12 LPAGFRFHPRDDELVIDYLLaCKLHGDPLQRQGcnipTLIDVDLNKCEPWDLPEIACIGGKEWYFYNLKDRRYATGKRTNRATESGYWKATGRD 105 799*************99751678888865544333247789***********7666789********************************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +e+++ k+ lvg++ktLvfy+grap+ge+tdWvmhe+r+ LPERR02G04310.1 106 REITR-KELLVGMRKTLVFYRGRAPRGERTDWVMHEFRV 143 ****9.9999***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-57 | 3 | 168 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.797 | 12 | 168 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-22 | 13 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MSWSLSMVEA RLPAGFRFHP RDDELVIDYL LACKLHGDPL QRQGCNIPTL IDVDLNKCEP 60 WDLPEIACIG GKEWYFYNLK DRRYATGKRT NRATESGYWK ATGRDREITR KELLVGMRKT 120 LVFYRGRAPR GERTDWVMHE FRVENHHGNH HHNQHLKEDW VLCRVFYKSR AELAAAPTME 180 HPHPPRYISG TTSRPPLPPP INSSISFNPD VLNDDHQVTR NDDLEVIKRE PSSLQEKGLA 240 HDQDEGIEGY YSFTDNASSE TWNLFRQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-45 | 8 | 169 | 11 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR02G04310.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004863 | 1e-63 | AP004863.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0023I17. | |||
GenBank | AP005804 | 1e-63 | AP005804.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0085K21. | |||
GenBank | AP014958 | 1e-63 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624259.1 | 1e-118 | NAC domain-containing protein 21/22 isoform X2 | ||||
Swissprot | Q84TE6 | 1e-77 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A0D9VCK2 | 0.0 | A0A0D9VCK2_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR02G04310.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1012 | 37 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.2 | 9e-75 | NAC domain containing protein 1 |