PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G03330.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GATA
Protein Properties Length: 342aa    MW: 36382.3 Da    PI: 4.686
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G03330.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.28.6e-17247283135
             GATA   1 CsnCg..ttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C++Cg  +t+Tp++Rrgpdg++tLCnaCGl+++ kg+
  LPERR02G03330.2 247 CHHCGisATSTPMMRRGPDGPRTLCNACGLMWANKGM 283
                      ****955667***********************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132012.794111146IPR010399Tify domain
SMARTSM009792.2E-7111146IPR010399Tify domain
PfamPF062003.9E-10114145IPR010399Tify domain
PfamPF062035.8E-16172214IPR010402CCT domain
PROSITE profilePS5101713.384172214IPR010402CCT domain
PROSITE profilePS501149.592241289IPR000679Zinc finger, GATA-type
SMARTSM004011.0E-13241294IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.23E-12245296No hitNo description
Gene3DG3DSA:3.30.50.106.9E-16246287IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.49E-14246289No hitNo description
PfamPF003202.1E-14247282IPR000679Zinc finger, GATA-type
PROSITE patternPS003440247274IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010496Biological Processintercellular transport
GO:0046907Biological Processintracellular transport
GO:0005783Cellular Componentendoplasmic reticulum
GO:0009506Cellular Componentplasmodesma
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MSGHHEAKPY QPRRGPERPP PPPAAEEAAA AAEAEAAAPP AAAEAEAEVE AMEPYEQQHQ  60
QEEEYEEGEE EGEEEEYEGA EAVPMDADAS AMAAAAGEMV PVAGAEAGGY PHVASNTLTL  120
SFQGEVYVFE SVSAERVQAV LLLLGGRELA PGSGSVPSSS TAYSKKMNFP HRMASLMRFR  180
EKRKERNFDK KIRYTVRKEV ALRMQRNRGQ FTSSKSKADE ATSSVTSPEG LPNWGAVEGR  240
PPSAAECHHC GISATSTPMM RRGPDGPRTL CNACGLMWAN KGMLREVTKS SPVPLQVVPA  300
GTNDVQNGIV EAPGLDQQNS ASKAVEEAIP AANGHESQSG VA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G03330.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By drought and salt stresses. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0689310.0AK068931.1 Oryza sativa Japonica Group cDNA clone:J023003E02, full insert sequence.
GenBankEU8470150.0EU847015.1 Oryza sativa Japonica Group clone KCS277B09 GATA zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006646885.11e-156PREDICTED: GATA transcription factor 17-like isoform X1
SwissprotQ6Z4331e-151GAT17_ORYSJ; GATA transcription factor 17
TrEMBLA0A0D9VC860.0A0A0D9VC86_9ORYZ; Uncharacterized protein
STRINGOPUNC02G02970.11e-165(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.22e-74ZIM-LIKE 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]