PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G03030.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family G2-like
Protein Properties Length: 489aa    MW: 54529 Da    PI: 6.0942
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G03030.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like353.1e-11263288126
          G2-like   1 kprlrWtpeLHerFveaveqLGGsek 26 
                      kprlrWt+eLHerFveav++L G+e 
  LPERR02G03030.1 263 KPRLRWTQELHERFVEAVNKLEGPES 288
                      79*********************985 PP

2G2-like513.2e-163193482655
          G2-like  26 kAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      +AtPk++l++mkv+gLt++h+kSHLQkYRl
  LPERR02G03030.1 319 EATPKSVLKIMKVEGLTIYHIKSHLQKYRL 348
                      69***************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.08E-12261288IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.7E-28262288IPR009057Homeodomain-like
PfamPF002492.4E-6265347IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.8E-11319349IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.604.7E-28320349IPR009057Homeodomain-like
SuperFamilySSF466891.08E-12321348IPR009057Homeodomain-like
PfamPF143792.7E-22384430IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MSTQSVIAVK QFSGPDKMAH ICAVPQPSAH NLSNANSDRS GSRNNTPLPC AIQSSNLKTE  60
LINSSGLPKI LPFSTDSNTE SSLSCISQAD LSDPVLSSSS TFCTSLYTSS LKNSDPCRKT  120
SDLPFLPHPP KCEQQQSSPG LSSSSLLLFD ADLRNSSHGN DEHTDFIKDF LNLSSDGSFH  180
GENSVIAYNE QMEFQFLSEQ LGIAITNNEE SPRLDDIYDS ALQLPSLPMS YCSDQEDLHD  240
AGSPVKVQLS SSRSSSGTPS CNKPRLRWTQ ELHERFVEAV NKLEGPESRV ITLVHSEEFD  300
HEKINITVLL MFYLIHLVEA TPKSVLKIMK VEGLTIYHIK SHLQKYRLAK YLPETKEDKK  360
PYSEEKKAKS VANGDYHAKK KRAQMAEALR MQMEVQKQLH EQLEVQRQLQ LRIEEHARYL  420
QKILENQQKT RESISSMTST TEGESSEFAQ IEKTEYKAET SSPPLSKCIT STTDAECNSQ  480
VDNKKTASG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in phosphate starvation signaling (PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:26082401). Functionally redundant with PHR1 and PHR2 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). {ECO:0000269|PubMed:26082401}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00354DAPTransfer from AT3G13040Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G03030.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated under Pi starvation conditions. {ECO:0000269|PubMed:26082401}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627390.10.0protein PHOSPHATE STARVATION RESPONSE 3
RefseqXP_015627391.10.0protein PHOSPHATE STARVATION RESPONSE 3
SwissprotQ6YXZ40.0PHR3_ORYSJ; Protein PHOSPHATE STARVATION RESPONSE 3
TrEMBLA0A0D9VC350.0A0A0D9VC35_9ORYZ; Uncharacterized protein
STRINGLPERR02G03030.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45263769
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.22e-61G2-like family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]