PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR02G03030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | G2-like | ||||||||
Protein Properties | Length: 489aa MW: 54529 Da PI: 6.0942 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 35 | 3.1e-11 | 263 | 288 | 1 | 26 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsek 26 kprlrWt+eLHerFveav++L G+e LPERR02G03030.1 263 KPRLRWTQELHERFVEAVNKLEGPES 288 79*********************985 PP | |||||||
2 | G2-like | 51 | 3.2e-16 | 319 | 348 | 26 | 55 |
G2-like 26 kAtPktilelmkvkgLtlehvkSHLQkYRl 55 +AtPk++l++mkv+gLt++h+kSHLQkYRl LPERR02G03030.1 319 EATPKSVLKIMKVEGLTIYHIKSHLQKYRL 348 69***************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.08E-12 | 261 | 288 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.7E-28 | 262 | 288 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.4E-6 | 265 | 347 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 1.8E-11 | 319 | 349 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 4.7E-28 | 320 | 349 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.08E-12 | 321 | 348 | IPR009057 | Homeodomain-like |
Pfam | PF14379 | 2.7E-22 | 384 | 430 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 489 aa Download sequence Send to blast |
MSTQSVIAVK QFSGPDKMAH ICAVPQPSAH NLSNANSDRS GSRNNTPLPC AIQSSNLKTE 60 LINSSGLPKI LPFSTDSNTE SSLSCISQAD LSDPVLSSSS TFCTSLYTSS LKNSDPCRKT 120 SDLPFLPHPP KCEQQQSSPG LSSSSLLLFD ADLRNSSHGN DEHTDFIKDF LNLSSDGSFH 180 GENSVIAYNE QMEFQFLSEQ LGIAITNNEE SPRLDDIYDS ALQLPSLPMS YCSDQEDLHD 240 AGSPVKVQLS SSRSSSGTPS CNKPRLRWTQ ELHERFVEAV NKLEGPESRV ITLVHSEEFD 300 HEKINITVLL MFYLIHLVEA TPKSVLKIMK VEGLTIYHIK SHLQKYRLAK YLPETKEDKK 360 PYSEEKKAKS VANGDYHAKK KRAQMAEALR MQMEVQKQLH EQLEVQRQLQ LRIEEHARYL 420 QKILENQQKT RESISSMTST TEGESSEFAQ IEKTEYKAET SSPPLSKCIT STTDAECNSQ 480 VDNKKTASG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in phosphate starvation signaling (PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:26082401). Functionally redundant with PHR1 and PHR2 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). {ECO:0000269|PubMed:26082401}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00354 | DAP | Transfer from AT3G13040 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR02G03030.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated under Pi starvation conditions. {ECO:0000269|PubMed:26082401}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015627390.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 3 | ||||
Refseq | XP_015627391.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 3 | ||||
Swissprot | Q6YXZ4 | 0.0 | PHR3_ORYSJ; Protein PHOSPHATE STARVATION RESPONSE 3 | ||||
TrEMBL | A0A0D9VC35 | 0.0 | A0A0D9VC35_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR02G03030.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4526 | 37 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13040.2 | 2e-61 | G2-like family protein |
Publications ? help Back to Top | |||
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