PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G02700.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family Nin-like
Protein Properties Length: 655aa    MW: 68710 Da    PI: 4.9819
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G02700.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK92.43.4e-29416467152
           RWP-RK   1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                      aek+++le+l+kyFs+++kdAA++Lgvc+T++KriCRq+GI+RWP+Rki+++
  LPERR02G02700.1 416 AEKSVTLEELQKYFSGSLKDAARSLGVCPTTMKRICRQHGIPRWPFRKISKV 467
                      5899*********************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.837406487IPR003035RWP-RK domain
PfamPF020422.8E-26419467IPR003035RWP-RK domain
SuperFamilySSF542777.52E-19543615No hitNo description
SMARTSM006662.6E-18548643IPR000270PB1 domain
PROSITE profilePS5174518.116548643IPR000270PB1 domain
CDDcd064071.35E-34549621No hitNo description
Gene3DG3DSA:3.10.20.2406.8E-23549620No hitNo description
PfamPF005645.2E-13549618IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MVVEVEADMD RVLDHFNLLA AGGSGRIEEA SSSLKERIAR ALRLYKDAAA ENAAAAGDDG  60
GGWLIQGSLA LPILDSGGGD GAGAGGCLAV LELVTTKPLL RVSGEIASLC NALQAVSLRG  120
AGICNAPAEV RPHEISPKNK PFCAKIRSST DLMPPAMNQI TNRNATRAAM AEVSVLLTTV  180
CEAHNLPLAQ TWVRCTSCSR GGGGGDGEAI LMTTAGAPFH LAAGAGADDA RGFRDACVEH  240
HLRCGAGAGA AVFCADVARC SKDDYPLAHY AGMYGLAGCL VLRADIAGAG SEEEEHAVLE  300
LFLPPDCAGV AEQKAAVDAI TATIKDCSGD LRAIVIGNLE DLVMETMADG DQCDELRHEM  360
DELGDDDQKC SDEEDQQLAV ENADIGELKI QSVDQIIGGE DPRSQGGKNK TRRGKAEKSV  420
TLEELQKYFS GSLKDAARSL GVCPTTMKRI CRQHGIPRWP FRKISKVNRS LDKMKRVMES  480
VNCSPSPPVA VPAHPALLLP PPAAAPPLPR PCLSSTLGEA SSHGSCQAPP LTKESLQKPP  540
NCGNGDGVVT IKASYRGDIV RFRVPCSSGV AAVKAEVAKR LSLEAGAFDV KYLDDDHEWV  600
LLSCDADFQE CLDVVPALPS RLAMAKSGTG MAAQVVRLRV QEVADNIGSS CASSD
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G02700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627710.10.0protein NLP3-like
TrEMBLA0A0D9VBZ30.0A0A0D9VBZ3_9ORYZ; Uncharacterized protein
STRINGLPERR02G02700.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62692939
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64530.11e-61Nin-like family protein