PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G02130.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family BES1
Protein Properties Length: 736aa    MW: 81632.3 Da    PI: 7.1862
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G02130.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822162.42.9e-501132564137
           DUF822   4 grkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeaeaagssasaspesslq 95 
                      g++++++E+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+Vl+AL+r+AGw+v++DGtt+r + +pl   +a+  g ++ +s+e+++ 
  LPERR02G02130.1 113 GEREREREKERTKLRERHRRAITSRMLAGLRQHGNFPLPARADMNDVLAALARAAGWTVQADGTTFRSSPQPLppPSAQLPGIFHGNSVETPSF 206
                      67899******************************************************************9998999**************99 PP

           DUF822  96 .sslkssalaspvesysaspksssfpspssldsislasa.......asll 137
                       s+l+s+a+ +p++s+++ +++++++spsslds+ +a +        ++ 
  LPERR02G02130.1 207 tSVLNSYAIGTPLDSQASILQTDDSLSPSSLDSVVVAGQsiksekyGNSD 256
                      899*******************************9998766555553333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056876.2E-48113264IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514452.28E-156282707IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.805.5E-161282707IPR013781Glycoside hydrolase, catalytic domain
PfamPF013735.1E-74307673IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.4E-49320334IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.4E-49341359IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.4E-49458480IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.4E-49525544IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.4E-49559575IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.4E-49576587IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.4E-49594617IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.4E-49632654IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 736 aa     Download sequence    Send to blast
MAVPYHRLNQ TKLASPLATP AFLYLPSRAH SSVSVSSHKS PLHLAADRLD GGGGGAPAMT  60
TKHPHSPMLD GEAPPPPPPH RRPRGFASSP SPAAAGDHPT SPAAATAAPR RRGERERERE  120
KERTKLRERH RRAITSRMLA GLRQHGNFPL PARADMNDVL AALARAAGWT VQADGTTFRS  180
SPQPLPPPSA QLPGIFHGNS VETPSFTSVL NSYAIGTPLD SQASILQTDD SLSPSSLDSV  240
VVAGQSIKSE KYGNSDSVSS LNCLENHQLI RASAALAGDY TRTPYIPVYA SLPMGIINSH  300
CQLIDPEGVR AELMHLKSLN VDGVVVDCWW GIVEAWTPHK YEWSGYRDLF GIIKEFKLTV  360
QVVLSFHGSR ETGSGGGAMS ISLPKWVMEI AQENQDIFFT DREGRRNTEC LSWGIDKERV  420
LQGRTGIEAY FDFMRSFHME FRNLTEEGLI SSIEIGLGVS GELRYPSCPE RMGWRYPGIG  480
EYMQKNLRQA ALSRGHLFWA RGPDNAGYYN SRPHETGFFC DGGDYDSYYG RFFLNWYSGF  540
LIDHVDQVLS LATLAFNGVE TVVKIPSIYW WYRTVSHAAE LTAGFYNPTN RDGYSPVFRM  600
LKKHSVILKF VCYGPEYTIQ QNNEEFADPE GLTWQVMNAA WDHGLSISIE SALPCLDGEM  660
YSKILETAKP RNDPDRHHVS FLAYRHLPPF LLQRDACFSE LGNFVKTALL LSSPLSQLGQ  720
MLIETPMGGR MDPSKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-11628570511438Beta-amylase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G02130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1200490.0AK120049.1 Oryza sativa Japonica Group cDNA clone:J013000A07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622759.10.0beta-amylase 8
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLA0A0D9VBR60.0A0A0D9VBR6_9ORYZ; Beta-amylase
STRINGLPERR02G02130.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21413663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.20.0beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]