PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR02G00910.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | MYB | ||||||||
Protein Properties | Length: 338aa MW: 37234.4 Da PI: 8.2957 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.2 | 2.8e-16 | 59 | 106 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l d++ ++G g+W++++++ g+ R +k+c++rw +yl LPERR02G00910.1 59 KGLWSPEEDQRLRDYIVKHGLGCWSAVPAKAGLQRNGKSCRLRWINYL 106 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.6 | 1e-16 | 112 | 157 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +++eE+++ +++ ++lG++ W+ Ia +++ gRt++++k++w++yl LPERR02G00910.1 112 RGMFSQEEEDIVINLQAKLGNK-WSQIAMHLP-GRTDNEVKNYWNSYL 157 788*******************.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.785 | 54 | 106 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.4E-29 | 56 | 153 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.8E-12 | 58 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-14 | 59 | 106 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.3E-22 | 60 | 113 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.61E-11 | 62 | 106 | No hit | No description |
PROSITE profile | PS51294 | 25.69 | 107 | 161 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-15 | 111 | 159 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.4E-15 | 112 | 157 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-25 | 114 | 161 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.23E-12 | 115 | 157 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MVLKGLAQVC YCNHSSYSEF QTNIQEEQQK EEEKFREGRK KRRAMGCRSC DKPKMNYRKG 60 LWSPEEDQRL RDYIVKHGLG CWSAVPAKAG LQRNGKSCRL RWINYLRPGL KRGMFSQEEE 120 DIVINLQAKL GNKWSQIAMH LPGRTDNEVK NYWNSYLKKR VMQAQGSIPN NLSANEVTSM 180 STTDPSSLHH HHHHQIKNSS GSTTTSHDQD ANLSSGGSHG GCISAPALAV TTAANEPFDH 240 QHQQHKSFVF SGDWMAAAAA APESYSMSAQ HWPASTASSG NVTPSHAGAF GDQMSGSYGA 300 LQQQNSAAAT MAGGGYFDLL NMGDIYGGFA ATNDDLLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-25 | 53 | 161 | 23 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR02G00910.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK368664 | 1e-122 | AK368664.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2077L03. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006646780.1 | 1e-170 | PREDICTED: transcription factor LAF1-like | ||||
Swissprot | Q8LPH6 | 7e-56 | MYB86_ARATH; Transcription factor MYB86 | ||||
TrEMBL | A0A0D9VBB0 | 0.0 | A0A0D9VBB0_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR02G00910.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12296 | 27 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26660.1 | 8e-59 | myb domain protein 86 |