PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR01G40230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | MYB | ||||||||
Protein Properties | Length: 239aa MW: 26138.7 Da PI: 10.3146 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.3 | 2.4e-15 | 12 | 57 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W +eEd ll ++v+++G +W+ I+ ++ gR++k+c++rw + LPERR01G40230.1 12 KGSWREEEDGLLRRLVAEHGAQRWSVISGGIP-GRSGKSCRLRWCNQ 57 799*****************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 56 | 9.2e-18 | 66 | 108 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T++E+ l+ a++++G++ W+tIar ++ gRt++++k++w++ LPERR01G40230.1 66 PFTAQEEAVLAAAHARHGNK-WATIARLLP-GRTDNSVKNHWNSN 108 89******************.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.986 | 7 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.7E-27 | 11 | 105 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-13 | 11 | 60 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-15 | 12 | 57 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.7E-22 | 13 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.76E-12 | 14 | 56 | No hit | No description |
SMART | SM00717 | 4.6E-14 | 63 | 111 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.662 | 64 | 113 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-22 | 65 | 113 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.86E-11 | 66 | 109 | No hit | No description |
Pfam | PF00249 | 6.0E-15 | 66 | 108 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MGVSRGRASE KKGSWREEED GLLRRLVAEH GAQRWSVISG GIPGRSGKSC RLRWCNQLSP 60 GVEHRPFTAQ EEAVLAAAHA RHGNKWATIA RLLPGRTDNS VKNHWNSNLR KTLRRQAKAK 120 AKAAASLQEQ STAATCNKSP PPPLQLRRPS SDPTNYIVLD DDAPPPDPEP SLTLSLSLSL 180 PLPAGAAAAH HQDVDDENKM LGLLVMRQLV REEVQRHTPQ LAYSLMAMAA CCRPPNAPN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-32 | 12 | 113 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 4e-32 | 12 | 113 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 4e-32 | 12 | 113 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 9e-33 | 12 | 113 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 9e-33 | 12 | 113 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR01G40230.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022681066.1 | 3e-68 | transcription factor CSA-like | ||||
TrEMBL | A0A0D9VAZ6 | 1e-173 | A0A0D9VAZ6_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G40230.1 | 1e-174 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13544 | 27 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50060.1 | 1e-41 | myb domain protein 77 |