PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR01G40120.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

MYB

Protein Properties

Length: 254aa MW: 28300.3 Da PI: 8.8387

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR01G40120.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.7	6.5e-14	42	89	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed +lv v++lG ++W+ a+ g+ R++k+c++rw +yl LPERR01G40120.1 42 KGPWTEQEDVQLVWFVRLLGERRWDFLAKVSGLQRSGKSCRLRWVNYL 89 79********************************************97 PP
2	Myb_DNA-binding	60.6	3.2e-19	95	140	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr+++eE+ v++++++G++ W++Ia+ m+ gRt++++k++w+++l LPERR01G40120.1 95 RGRMSPEEERMVVQLHAKHGNR-WSRIAKSMP-GRTDNEIKNYWRTHL 140 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.417	37	89	IPR017930	Myb domain
SuperFamily	SSF46689	2.46E-28	39	136	IPR009057	Homeodomain-like
SMART	SM00717	7.3E-11	41	91	IPR001005	SANT/Myb domain
Pfam	PF00249	1.6E-12	42	89	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-17	43	96	IPR009057	Homeodomain-like
CDD	cd00167	9.98E-9	44	89	No hit	No description
PROSITE profile	PS51294	27.748	90	144	IPR017930	Myb domain
SMART	SM00717	1.5E-18	94	142	IPR001005	SANT/Myb domain
Pfam	PF00249	2.7E-17	95	140	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-25	97	143	IPR009057	Homeodomain-like
CDD	cd00167	6.10E-14	97	140	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MVVGGKKVQA SRQPGRSSSS SSSAVVVQQA EVAAAGKGGM RKGPWTEQED VQLVWFVRLL 60 GERRWDFLAK VSGLQRSGKS CRLRWVNYLH PGLKRGRMSP EEERMVVQLH AKHGNRWSRI 120 AKSMPGRTDN EIKNYWRTHL RKQAAQKQQL NLQAASTPSS SSISDDDHNS SSSSSSSNGS 180 SSNNNNNDDS MQQQQQLSSF HLPLWNDDNI DCWSSTQLVA PASPLWDIDD AFCSDYSLPL 240 PLWGSAHDDA DYIN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	4e-26	42	144	4	105	MYB PROTO-ONCOGENE PROTEIN
1h88_C	1e-25	42	144	58	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	1e-25	42	144	58	159	MYB PROTO-ONCOGENE PROTEIN
1mse_C	4e-26	42	144	4	105	C-Myb DNA-Binding Domain
1msf_C	4e-26	42	144	4	105	C-Myb DNA-Binding Domain
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR01G40120.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY398581	1e-134	AY398581.1 Oryza sativa (indica cultivar-group) Myb factor protein (Myb) mRNA, complete cds, alternatively spliced.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015621159.1	1e-83	transcription factor MYB59
TrEMBL	A0A0D9VAY2	0.0	A0A0D9VAY2_9ORYZ; Uncharacterized protein
STRING	LPERR01G40120.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP636	37	169

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59780.3	5e-57	myb domain protein 59