PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR01G39850.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | G2-like | ||||||||
Protein Properties | Length: 233aa MW: 25157.1 Da PI: 6.6318 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 95 | 5.8e-30 | 115 | 168 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rl+Wtp+LH+rFve+v++L G ++A+Pkti++lm+v+gLt+e+v+SHLQkYRl LPERR01G39850.1 115 KARLVWTPQLHKRFVEVVAHL-GMKNAVPKTIMQLMNVEGLTRENVASHLQKYRL 168 68*******************.9*******************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.857 | 112 | 171 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.33E-19 | 114 | 172 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-30 | 114 | 173 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.4E-24 | 115 | 168 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.1E-9 | 118 | 167 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042753 | Biological Process | positive regulation of circadian rhythm | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MGEEAPEEYD LDMYGGGGGG GGEEERVMEW EAGLPGADEL TPLSQPLVPA GLAAAFRIPP 60 EPGRTLLDVH RASAATFSRL RRASSATSFP AFNPDEAESG VAAAEGGNNN GGGKKARLVW 120 TPQLHKRFVE VVAHLGMKNA VPKTIMQLMN VEGLTRENVA SHLQKYRLYV KRMQGLSNEG 180 PSPSDHIFAS TPVPLLHDHV PNAYASSNSY HQAHMYAHAL SSSYAHHYHH ADK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 4e-32 | 115 | 171 | 1 | 57 | Transcription factor LUX |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that is essential for the generation of the circadian clock oscillation. Binds to specific sites on CCA1 promoter leading to CCA1 activation (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00014 | PBM | Transfer from AT3G46640 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR01G39850.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian oscillation with peaks at subjective dusk. {ECO:0000269|PubMed:16164597}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB206578 | 1e-106 | AB206578.1 Oryza sativa Japonica Group OsPCL1 gene for putative transcription factor, complete cds. | |||
GenBank | AP003277 | 1e-106 | AP003277.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0518C01. | |||
GenBank | AP014957 | 1e-106 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 1e-106 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025878289.1 | 3e-99 | transcription factor PCL1 | ||||
Swissprot | Q94DH3 | 1e-100 | PCL1_ORYSJ; Transcription factor PCL1 | ||||
TrEMBL | A0A0D9VAU9 | 1e-170 | A0A0D9VAU9_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G39850.1 | 1e-171 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1620 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59570.1 | 6e-62 | G2-like family protein |