PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR01G38080.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | NAC | ||||||||
Protein Properties | Length: 196aa MW: 21788.6 Da PI: 8.3785 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 68.8 | 1.5e-21 | 16 | 144 | 6 | 128 |
NAM 6 rFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWk..atgkdkevlskk 96 F+Pt++el+ ++L+++++g + +++ ++ e+d + + PwdL +++++++e yfFs+r++++++++ +r ++ g W +t + ++v + + LPERR01G38080.1 16 AFDPTEDELMLHFLRPQLRGFSPRVAGAVVEADPCAAAPWDLL-ALHGRRDEGYFFSPRARASRRKQSVRRtIAGGGAWMhsSTKNGQSVSELG 108 6************************999**************6.677778899******************6677999*833444556666668 PP NAM 97 gelvglkktLvfy....kgrapkgektdWvmheyrl 128 + +++ + fy +g + ++t W+m ey++ LPERR01G38080.1 109 VVVRWCRVNFCFYvfggSGGEAGRVSTGWMMAEYEI 144 8889*********988756666668*********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 24.98 | 11 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.4E-13 | 16 | 144 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.36E-31 | 16 | 170 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MGEELNLIIR EDDCAAFDPT EDELMLHFLR PQLRGFSPRV AGAVVEADPC AAAPWDLLAL 60 HGRRDEGYFF SPRARASRRK QSVRRTIAGG GAWMHSSTKN GQSVSELGVV VRWCRVNFCF 120 YVFGGSGGEA GRVSTGWMMA EYEITDPRCY RRADDGEEDE FWVLCHVRKS SRSPAVRDST 180 SAAAPAKSRR RKAAVA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR01G38080.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641921.1 | 1e-88 | NAC domain-containing protein 48-like isoform X1 | ||||
Refseq | XP_015641928.1 | 1e-88 | NAC domain-containing protein 48-like isoform X2 | ||||
TrEMBL | A0A0D9VA60 | 1e-141 | A0A0D9VA60_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G38080.1 | 1e-142 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13761 | 25 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.2 | 8e-14 | NAC domain containing protein 47 |