PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR01G37480.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

HB-other

Protein Properties

Length: 1159aa MW: 127631 Da PI: 8.2139

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR01G37480.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	19.3	1.9e-06	79	135	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++R ++++ ++ +++lF+ + ++ ++e +e+++ g+t +qV+ +F +R++ +k LPERR01G37480.1 79 KKPRDLLNPKAVKFMQSLFAVKDTIGKKETREISATFGVTVTQVREFFASQRTRVRK 135 799***************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.458	76	136	IPR001356	Homeobox domain
SMART	SM00389	0.0027	78	140	IPR001356	Homeobox domain
CDD	cd00086	6.30E-4	79	135	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.9E-5	79	141	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.02E-6	79	138	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1159 aa Download sequence Send to blast
MELVPFKPAA GALVESGGGG GGAYAGWDSI PAMVAAQQEL LHAQVDQLQR LVVAQCRLTG 60 VNPLAQEMAA GALSIKIGKK PRDLLNPKAV KFMQSLFAVK DTIGKKETRE ISATFGVTVT 120 QVREFFASQR TRVRKFVRLS REKALRIESS KVPDNVCSIS TEQTPVDIEA NAQVIEPLRT 180 LEPLEVQQIP LQHVVVPQIY LQLPVVPQSC ATSVAPTGIM QPIDAKTTPD SVQKETKQEE 240 VAAGVESEDK KFLESIFALM RKENTFSGQV KLMESILQIN NVTVLSWFLT MGGLAIVSTW 300 LSEAVTEEQT TVILVIFKVL LHLPLHKALP AHMSTVLQTI NRLRFYRTQD ISSKARNLLS 360 RLSKVLVRSQ ALKKSQKDLI CKQRISEILR DESWKSEVDI TEEILALTED ASESRMPEPR 420 KTPLLLTASP DESNKKGSLQ TKSKERRKVL LVEHPNRKAA GKNVIPTRSK STNNSRPLSA 480 DDIQKAKMRA MFMQEKYGKV DTSKVTERSH ATEIQKQTGL VDSNAPLVPR SPLTSISKQP 540 VDPSPSTSKQ STVSPSDMPE IPVSSKLNIT TKENFTEKLD SKRVIWQTPP DVRIDPAWSL 600 GAGENSKEFE VQTQRNRREK ETFYASLKDI PLNPKDPWDV EMDFDDSLTP EIPIDQPPDA 660 DAMETDSLST APPNIGVPVV DKQVGSTSSV SPAVASGSNG ASSEPDLELL AVLLKNPQLV 720 FALTSNQGEA LPSEQTVALL DMLKQTGLGL SELVNSLGNN SGVQKEPESG PEAIPTSLPS 780 PTPPKDLAAR DGWRSEFPAE VRTPNLQQAH LPNRANAPPI SSTVQQSFSN VSISVNLSTQ 840 HVAPMNDLLS RTTVHHHTQS YALASDPVAV DVHRQPAMNK LAHEVQNISH PAVVAHSSVA 900 EPHASYTSQT WQPSAASVAT TGRNATPDRW AARTTSSFNV APSNPVTYAN QNVYCNHSTT 960 QSTYNAYGST PVSSHSLLPG QGLERNGYTH TAEYQTMTAR DALRRNSRSP ELGASAALYG 1020 SSSQGYVPEP SRQWNYGQQS YNPEPSRGQQ SYIPEPSRGQ QNYNPEPSRQ WNSGQQSYNP 1080 TEPARQWSSG QQSYSNPAET SRQWSSAQQS YNPEPSRQWN SGHQSQNPES LRQWSHHGKQ 1140 ERYNNPTDGR NSYDQHWRR

Sequence ? help Back to Top

Protein Sequence Length: 1159 aa Download sequence Send to blast

MELVPFKPAA GALVESGGGG GGAYAGWDSI PAMVAAQQEL LHAQVDQLQR LVVAQCRLTG  60
VNPLAQEMAA GALSIKIGKK PRDLLNPKAV KFMQSLFAVK DTIGKKETRE ISATFGVTVT  120
QVREFFASQR TRVRKFVRLS REKALRIESS KVPDNVCSIS TEQTPVDIEA NAQVIEPLRT  180
LEPLEVQQIP LQHVVVPQIY LQLPVVPQSC ATSVAPTGIM QPIDAKTTPD SVQKETKQEE  240
VAAGVESEDK KFLESIFALM RKENTFSGQV KLMESILQIN NVTVLSWFLT MGGLAIVSTW  300
LSEAVTEEQT TVILVIFKVL LHLPLHKALP AHMSTVLQTI NRLRFYRTQD ISSKARNLLS  360
RLSKVLVRSQ ALKKSQKDLI CKQRISEILR DESWKSEVDI TEEILALTED ASESRMPEPR  420
KTPLLLTASP DESNKKGSLQ TKSKERRKVL LVEHPNRKAA GKNVIPTRSK STNNSRPLSA  480
DDIQKAKMRA MFMQEKYGKV DTSKVTERSH ATEIQKQTGL VDSNAPLVPR SPLTSISKQP  540
VDPSPSTSKQ STVSPSDMPE IPVSSKLNIT TKENFTEKLD SKRVIWQTPP DVRIDPAWSL  600
GAGENSKEFE VQTQRNRREK ETFYASLKDI PLNPKDPWDV EMDFDDSLTP EIPIDQPPDA  660
DAMETDSLST APPNIGVPVV DKQVGSTSSV SPAVASGSNG ASSEPDLELL AVLLKNPQLV  720
FALTSNQGEA LPSEQTVALL DMLKQTGLGL SELVNSLGNN SGVQKEPESG PEAIPTSLPS  780
PTPPKDLAAR DGWRSEFPAE VRTPNLQQAH LPNRANAPPI SSTVQQSFSN VSISVNLSTQ  840
HVAPMNDLLS RTTVHHHTQS YALASDPVAV DVHRQPAMNK LAHEVQNISH PAVVAHSSVA  900
EPHASYTSQT WQPSAASVAT TGRNATPDRW AARTTSSFNV APSNPVTYAN QNVYCNHSTT  960
QSTYNAYGST PVSSHSLLPG QGLERNGYTH TAEYQTMTAR DALRRNSRSP ELGASAALYG  1020
SSSQGYVPEP SRQWNYGQQS YNPEPSRGQQ SYIPEPSRGQ QNYNPEPSRQ WNSGQQSYNP  1080
TEPARQWSSG QQSYSNPAET SRQWSSAQQS YNPEPSRQWN SGHQSQNPES LRQWSHHGKQ  1140
ERYNNPTDGR NSYDQHWRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR01G37480.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK066698	0.0	AK066698.1 Oryza sativa Japonica Group cDNA clone:J013073H18, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015620702.1	0.0	homeobox protein LUMINIDEPENDENS
TrEMBL	A0A0D9V9Y0	0.0	A0A0D9V9Y0_9ORYZ; Uncharacterized protein
STRING	LPERR01G37480.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8043	30	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-159	HB-other family protein