PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G37140.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ARF
Protein Properties Length: 804aa    MW: 90494.2 Da    PI: 6.5914
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G37140.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3741.7e-23130231199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++ +++a+e+       +  ++ +++l+ +d++g+ W++++i+r++++r++l++GW+ Fv++++L +gD ++F   + 
  LPERR01G37140.1 130 FCKTLTASDTSTHGGFSVLRRHADEClppldmsQ--SPPTQELVAKDLHGNDWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RG 219
                      99*****************************644..444559************************************************..44 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      +++el+v+v+r+
  LPERR01G37140.1 220 ENGELRVGVRRA 231
                      9999*****996 PP
2Auxin_resp110.81.4e-36256337183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      a+ha++tks+F+v+Y+Pr+s+seF+++++++++++k+++svGmRf+m+fe+e+++e+r++Gt++g ++ld+  Wp+S WrsLk
  LPERR01G37140.1 256 AWHAINTKSMFTVYYKPRTSPSEFIIPYDQYMESVKNNYSVGMRFRMRFEGEEAPEQRFTGTIIGSENLDQ-LWPESSWRSLK 337
                      89******************************************************************999.9********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.57E-40122259IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.5E-41123245IPR015300DNA-binding pseudobarrel domain
CDDcd100175.87E-21128230No hitNo description
SMARTSM010193.8E-22130232IPR003340B3 DNA binding domain
PROSITE profilePS5086311.899130232IPR003340B3 DNA binding domain
PfamPF023621.9E-21130231IPR003340B3 DNA binding domain
PfamPF065071.8E-33256337IPR010525Auxin response factor
PfamPF023091.0E-14674779IPR033389AUX/IAA domain
SuperFamilySSF542773.38E-13690771No hitNo description
PROSITE profilePS5174526.502694787IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009737Biological Processresponse to abscisic acid
GO:0009911Biological Processpositive regulation of flower development
GO:0010047Biological Processfruit dehiscence
GO:0010150Biological Processleaf senescence
GO:0010227Biological Processfloral organ abscission
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 804 aa     Download sequence    Send to blast
MPPAAMAPPP PPQHGSSTGD PLYDELWHAC AGPLVTVPRI GDLVFYFPQG HIEQVEASMN  60
QVADNQMRLY DLPSKLLCRV LNVELKAEQD TDEVYAQVML MPEPEQNEMA VEKSTPTSGP  120
VQARPPVRSF CKTLTASDTS THGGFSVLRR HADECLPPLD MSQSPPTQEL VAKDLHGNDW  180
RFRHIFRGQP RRHLLQSGWS VFVSSKRLVA GDAFIFLRGE NGELRVGVRR AMRQMSNVPS  240
SVISSQSMHL GVLATAWHAI NTKSMFTVYY KPRTSPSEFI IPYDQYMESV KNNYSVGMRF  300
RMRFEGEEAP EQRFTGTIIG SENLDQLWPE SSWRSLKVRW DEPSNIPRPD RVSPWKIEPA  360
SSPPVNPLPL SRVKRPRPNA PPASPESPVL TKEAATKVDI DSAQVRSQNS MVLQGQEQMT  420
LRNSLTDSND SDATVHKPMI WSPSPNGAKA HPLTFQQRPS IPMDSWMQLG RRETDFKDAR  480
SVSQSFGDSP GFFMQNFDEP SNHHASFKNQ FQDQGSARHF SDPYLYVPSQ HSLTVESSTQ  540
MHTDSKELHF WNGQSTVYGN SRDQPQNFRF EQNSSSWLNQ PFTRPEQPRV IRPHASIAPV  600
ELEKTEGSGF KIFGFKVDTT NTPNNHLSSP MAATHEPMLQ TPASLNQLQP AQTDCVPEVS  660
VSTAGTTTEN EKSAQQAQQS SKDVQNKSQG ASTRSCTKVH KQGVALGRSV DLSKFNNYDE  720
LKAELDKMFE FEGELVSSNK NWQIVYTDNE GDMMLVGDDP WEEFCSIVRK IYIYTKEEVQ  780
KMNSKSNTPR KEDSSENEKG SVKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1701536212357Auxin response factor 1
4ldw_A1e-1701536212357Auxin response factor 1
4ldw_B1e-1701536212357Auxin response factor 1
4ldx_A1e-1701536212357Auxin response factor 1
4ldx_B1e-1701536212357Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1373377KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00574DAPTransfer from AT5G62000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G37140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0723090.0AK072309.1 Oryza sativa Japonica Group cDNA clone:J023022C23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650953.10.0auxin response factor 4
SwissprotQ5JK200.0ARFD_ORYSJ; Auxin response factor 4
TrEMBLA0A0D9V9T50.0A0A0D9V9T5_9ORYZ; Auxin response factor
STRINGLPERR01G37140.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117836111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Song X, et al.
    Rice RNA-dependent RNA polymerase 6 acts in small RNA biogenesis and spikelet development.
    Plant J., 2012. 71(3): p. 378-89
    [PMID:22443269]
  3. Kishimoto N, et al.
    Identification of the duplicated segments in rice chromosomes 1 and 5 by linkage analysis of cDNA markers of known functions.
    Theor. Appl. Genet., 1994. 88(6-7): p. 722-6
    [PMID:24186168]