PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G37100.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family Trihelix
Protein Properties Length: 311aa    MW: 32906.7 Da    PI: 7.5084
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G37100.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix69.46.9e-222398172
         trihelix  1 rWtkqevlaLiearremeerlrrg....klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72
                     rWt++e+l+L++a+r me+r + g    +    +W++vs+++r++g+er+p qC+++w nl+++ kki ++e+kr+
  LPERR01G37100.1 23 RWTRHETLVLLQAKRGMERRGGGGgrwsSPVRLKWAAVSAYCRRHGVERGPMQCRKRWGNLSWDLKKIVAWENKRN 98
                     8*******************997433337889*****************************************984 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.6551684IPR017877Myb-like domain
PfamPF138372.9E-92398No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MSGAGNASSP AAAASTPRSR LPRWTRHETL VLLQAKRGME RRGGGGGRWS SPVRLKWAAV  60
SAYCRRHGVE RGPMQCRKRW GNLSWDLKKI VAWENKRNGL AGGEDVAVAS FWEMRGEQRR  120
ARQLPSSFDR EVYDLLVGGG GGGGDDVAPP FEFGEDLAGD GDGDGDDADE LPPLMVMPIS  180
ARKYVPPAAS SQQECSDPAT VSAKKGGAAA SDKNSTSQHD GGVGGGDMKD SEATYFAGIG  240
GEEGTTTATA TATTTSIGKQ VIEALERGNR MLGDHLEAQR SIWAVERDQR AALLAAVDKL  300
AVAVGRIADK L
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G37100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629515.11e-140trihelix transcription factor ASR3
TrEMBLA0A0D9V9T10.0A0A0D9V9T1_9ORYZ; Uncharacterized protein
STRINGLPERR01G37100.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139722224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.18e-29Trihelix family protein