PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR01G36990.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | NAC | ||||||||
Protein Properties | Length: 222aa MW: 23249.1 Da PI: 9.2778 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 88.6 | 1.1e-27 | 20 | 152 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya.tgkrknra....tksgyWkatgkd 89 lp GfrF+Ptdeel+ +yL++kv + +l++ +vi+ +d+ +++P+dL +e e yfF++ +++ +g ra g+W+a+gk+ LPERR01G36990.1 20 LPIGFRFRPTDEELLLHYLRRKVLSFPLPA-DVIPVADLARLHPSDLL-LPGDGEGERYFFHRPATSCWrKGGGGGRAggggGGGGVWRASGKE 111 699***************************.99**************6.334566699***99988876357777777333345899******* PP NAM 90 kevlsk..kgel......vglkktLvfykgrapkgektdWvmheyrl 128 k v++ + vg k+tLvf+ + ++t+W mhe+rl LPERR01G36990.1 112 KLVVAGnkG--GaaaavaVGAKRTLVFF----LRHRRTEWAMHEFRL 152 ***996551..1455666**********....34457********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.02E-38 | 17 | 177 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 37.943 | 20 | 177 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-19 | 21 | 152 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MATSPALTAA GGGGGGYRTL PIGFRFRPTD EELLLHYLRR KVLSFPLPAD VIPVADLARL 60 HPSDLLLPGD GEGERYFFHR PATSCWRKGG GGGRAGGGGG GGGVWRASGK EKLVVAGNKG 120 GAAAAVAVGA KRTLVFFLRH RRTEWAMHEF RLLPAGAGAD QTPAAAKEWV VCRIFRRSPP 180 RVRRRDDDDV SVAPSSPSSC VTDGGGDGEE GEEESSGGDG SN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-20 | 19 | 178 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-20 | 19 | 178 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-20 | 19 | 178 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-20 | 19 | 178 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-20 | 19 | 178 | 16 | 166 | NAC domain-containing protein 19 |
4dul_B | 1e-20 | 19 | 178 | 16 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 91 | 99 | GGRAGGGGG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR01G36990.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020184279.1 | 4e-64 | NAC domain-containing protein 83-like | ||||
TrEMBL | A0A0D9V9R8 | 1e-155 | A0A0D9V9R8_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G36990.1 | 1e-156 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8233 | 30 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33480.1 | 7e-23 | NAC domain containing protein 41 |